Bioinformatics and computational biology

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Whole-Slide CD8 IHC Data and Tissue Annotation Data (HALO)

dataset posted on 2025-05-09

Michael Fotheringham

VizCNV v4.2.4

software posted on 2025-05-09

Transcriptomic Insights into Metabolic Differences Between Toxic and Non-toxic Alexandrium minutum Strains

dataset posted on 2025-05-07

Brian William Hingpit

Supplementary data for the publication in Clinical Epigenetics, <b>Allelic Expression Patterns of Imprinted and Non-imprinted Genes in Cancer Cell Lines from Multiple Histologies. </b>Authors: Julia Krushkal, Travis L. Jensen, George Wright, Yingdong Zhao. DOI: 10.1186/s13148-025-01883-3

Supplementary data for the publication in Clinical Epigenetics, Allelic Expression Patterns of Imprinted and Non-imprinted Genes in Cancer Cell Lines from Multiple Histologies. Authors: Julia Krushkal, Travis L. Jensen, George Wright, Yingdong Zhao. DOI: 10.1186/s13148-025-01883-3

dataset posted on 2025-05-06

Oscillatory Field Genesis: The Emergent Architecture of Spacetime, Matter, and Memory

Oscillatory Field Genesis: The Emergent Architecture of Spacetime, Matter, and Memory

dataset posted on 2025-05-05

FILES UNDER EMBARGO

ACCELERATING BIOINFORMATICS WORKLOADS USING GPUS

thesis posted on 2025-05-03 in Purdue University Graduate School

Sree Charan Gundabolu

BVST test data

dataset posted on 2025-05-01

EC_Mol_pIC50_Model test data

dataset posted on 2025-05-01

High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation

dataset posted on 2025-04-23

MLOmics: Cancer Multi-Omics Database for Machine Learning

dataset posted on 2025-04-20

Supporting info for the manuscript: Molecular fingerprint of endocannabinoid signaling in the developing paraventricular nucleus of the hypothalamus as revealed by single-cell RNA-seq and in situ hybridization

software posted on 2025-04-17

CRISPR-BEasy source code

software posted on 2025-04-16

Virgo Benchmarking Datasets

dataset posted on 2025-04-13

Christopher Riccardi

Lam Code

dataset posted on 2025-04-11

ONLINE RESOURCE

CDS2 is a synthetic lethal target in mesenchymal-like cancers (dataset)

online resource posted on 2025-04-11

KaoWH Supplemental Figs. S1–S5

KaoWH Supplemental Figs. S1–S5

figure posted on 2025-04-11

Integrated Computational Study of ORF10 Binding Sites: DNA, FMN, and RNA Interaction Predictions

Integrated Computational Study of ORF10 Binding Sites: DNA, FMN, and RNA Interaction Predictions

dataset posted on 2025-04-10

RAZOR Database Contents

dataset posted on 2025-04-09

Supplementary Materials for CoMed

Supplementary Materials for CoMed

dataset posted on 2025-04-08

MullerNCItrain_.train-data.min.tsv

dataset posted on 2025-04-07

Supplementary material (Figures) of the paper titled "Restructuring knowledge graphs with conceptual models: implications for machine learning predictions in drug repurposing"

Supplementary material (Figures) of the paper titled "Restructuring knowledge graphs with conceptual models: implications for machine learning predictions in drug repurposing"

dataset posted on 2025-04-07

SRR7890830-SRR7890845-SRR9134697_neo_peps.fasta

dataset posted on 2025-04-06

Novel Insights into the Structural and Functional Analysis of ORF10 Protein Binding Pockets: Identification and Characterization of Two Distinct Druggable Sites.

Novel Insights into the Structural and Functional Analysis of ORF10 Protein Binding Pockets: Identification and Characterization of Two Distinct Druggable Sites.

dataset posted on 2025-04-06

Human Disease Blood Atlas: A Pan-Disease Blood Proteome Resource

dataset posted on 2025-04-04 in SciLifeLab

collection:
Assessing variant effect predictors and disease mechanisms in intrinsically disordered proteins - Data

posted on 2025-04-01

DESeq2 Expression Analysis

software posted on 2025-03-31

Mariana Salazar

Analysis of Intergenic Regions and CpG Distribution in SARS-CoV-2 (Wuhan-Hu-1 Genome)

Analysis of Intergenic Regions and CpG Distribution in SARS-CoV-2 (Wuhan-Hu-1 Genome)

dataset posted on 2025-03-30

Automatic Metadata Generation and Verification for AI-Ready Fish Image Collections

Automatic Metadata Generation and Verification for AI-Ready Fish Image Collections

poster posted on 2025-03-28

brca_atlas

software posted on 2025-03-28

FILES UNDER EMBARGO

A Multi-omics Integration Approach to Identify Molecular Contributors of Absence Epilepsy and Post-Traumatic Epilepsy

thesis posted on 2025-03-28 in Monash University

Debbie Syuen Ee Chong

Bacterial and human proteomes dataset

dataset posted on 2025-03-26 in SciLifeLab

collection:
2024_Szallasi_LUSC-screens

posted on 2025-03-23

Cohort_KG.xlsx

dataset posted on 2025-03-23

cohort_KG(upload).xlsx

dataset posted on 2025-03-22

Figure 6. Sites of Conservation and Positive Selection

Figure 6. Sites of Conservation and Positive Selection

figure posted on 2025-03-18

Figure 4. Location of LsyM domain

Figure 4. Location of LsyM domain

figure posted on 2025-03-18

speciateIT: vSpeciateDB Models

dataset posted on 2025-03-14

tolKG

dataset posted on 2025-03-07 in Newcastle University

SupplementaryFile1.currentSampleProfile.csv

dataset posted on 2025-03-04

Chapter 5 - Experimental Results - Transcriptomic fingerprints in the heterogeneous response of skin fibroblasts to oxidants.

Chapter 5 - Experimental Results - Transcriptomic fingerprints in the heterogeneous response of skin fibroblasts to oxidants.

figure posted on 2025-02-28