workflows-1.0.zip (1.53 MB)
Options for RiboViz workflow management
software
posted on 2020-10-28, 16:34 authored by Michael JacksonMichael Jackson, Edward Wallace, Kostas Kavoussanakis, Felicity AndersonFelicity AndersonThis repository contains notes related to exploring options for reimplementing the RiboViz workflow (implemented at that time as a custom Python script) using workflow technologies popular within the bioinformatics community.
This repository also contains Snakemake, Nextflow and CWL workflows rapidly prototyped during these explorations. These prototype workflows are unsupported and not designed for actual use, but may prove of interest to others as snapshots of how a subset of the RiboViz workflow was reimplemented using these technologies.
Funding
BBSRC-NSF/BIO RiboViz for reliable, reproducible and rigorous quantification of protein synthesis from ribosome profiling data
Biotechnology and Biological Sciences Research Council
Find out more...Collaborative Research: BBSRC: RiboViz for reliable, reproducible and rigorous quantification of protein synthesis from ribosome profiling data
Directorate for Biological Sciences
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