First draft genome assembly of the desert locust, Schistocerca gregaria - extended data

Verlinden, Heleen; Sterck, Lieven; Li, Jia; Li, Zhen; Yssel, Anna; Gansemans, Yannick; Verdonck, Rik; Holtof, Michiel; Song, Hojun; Matheson, Tom; Ott, Swidbert; Deforce, Dieter; Van Nieuwerburgh, Filip; Van de Peer, Yves; Vanden Broeck, Jozef; Behmer, Spencer; Sword, Gregory

doi:10.6084/m9.figshare.12654026.v1

1/1

7 files

First draft genome assembly of the desert locust, Schistocerca gregaria - extended data

Version 2 2021-05-12, 21:30

Version 1 2020-07-15, 07:10

journal contribution

posted on 2020-07-15, 07:10 authored by Heleen VerlindenHeleen Verlinden, Lieven Sterck, Jia Li, Zhen Li, Anna Yssel, Yannick Gansemans, Rik Verdonck, Michiel Holtof, Hojun Song, Tom MathesonTom Matheson, Swidbert Ott, Dieter Deforce, Filip Van Nieuwerburgh, Yves Van de PeerYves Van de Peer, Jozef Vanden Broeck, Spencer Behmer, Gregory Sword

Supplementary Methods: Animal material; Genomic DNA extraction; Library construction, sequencing for RNA-Seq and de novo transcriptome assembly

Supplementary Table S1. Available Polyneopteran genomes (incl. Schistocerca gregaria for comparison)

Supplementary Table S2. Software parameter settings

Supplementary Table S3. Transfer RNA (tRNA), microRNA (miRNA), small nuclear RNA (snRNA) and ribosomal RNA (rRNA) content of the desert locust genome

Supplementary Table S4. Desert locust genome annotation details

Supplementary Table S5. BUSCO assessments for the genomes of the desert locust, Schistocerca gregaria, and the migratory locust, Locusta migratoria (Wang et al., 2014)

Supplementary Table S6. Functional annotation of the proteome of the desert locust

Funding

This work was supported by the Special Research Fund of KU Leuven (BOF grant C14/15/050 to JVdB and HV), the Research Foundation of Flanders (FWO grants: postdoctoral fellowship 64322 to HV, G0F2417N to JVdB, G090919N to JVdB and YVdP); the Special Research Fund of Ghent University (BOFPDO2018001701 to ZL), the Department of Research and Innovation of the University of Pretoria (grant A0C827 to AY); the U.S. National Science Foundation (IOS-1253493 and IOS-1636632 to HS), the U.S. Department of Agriculture (hatch grant TEX0-1-6584 to HS) and the Biotechnology and Biological Sciences Research Council UK (BBSRC; research grant BB/L02389X/1 to SRO and TM).

History

Usage metrics

Keywords

Eco-devo large genome size locust plague Orthoptera pest insect phenotypic plasticity polyphenism swarm Genomics

Licence

CC BY 4.0

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM

DC

First draft genome assembly of the desert locust, Schistocerca gregaria - extended data

Funding

History

Usage metrics

Categories

Keywords

Licence

Exports