Reference data for WhichTF software
To identify functionally important transcription factors (TFs), we present WhichTF, a computational method that ranks TFs based on experimentally characterized chromatin accessibility measurements.
This dataset contains the reference data for this new method described in the following paper:
Y. Tanigawa, E. S. Dyer, and G. Bejerano. WhichTF is dominant in your open chromatin data? PLOS Comput Biol 18(8): e1010378. (2022). https://doi.org/10.1371/journal.pcbi.1010378
Here, we provide the pre-computed reference for the software. There are 4 tar.gz compressed files, each of them correspond to one genome assembly of human or mouse genomes (human: hg19 and hg38 and mouse: mm9 and mm10).
Please see our manuscript and our Bitbucket repository (https://bitbucket.org/bejerano/whichtf) for more information about our method and the software.
If you use this dataset, please cite our pre-print.
Funding
Combining genetics, genomics, and anatomy to classify cell types across mammals
National Institute of Mental Health
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