Oxford Screening of CSF and Respiratory Samples ('OSCAR'): interactive data visualisation using Krona to display results from a pilot project using Next Generation Sequencing (NGS) for identification of viruses from clinical laboratory samples
datasetposted on 19.12.2017, 15:30 authored by Tanya Golubchik, Colin Sharp, William Gregory, Anna McNaughton, Nicholas Gow, Alina Mirea, Mathyruban Selvaratnam, Dona Foster, Monique Andersson, Katie Jeffery, Paul Klenerman, Philippa MatthewsPhilippa Matthews
This is an html file that allows visualisation of metagenomic dataset from a pilot project to screen CSF and respiratory samples using Illumina HiSeq after completion of routine diagnostic testing in a UK microbiology laboratory.
Methods and underlying metadata are available through a separate DOI (10.6084/m9.figshare.5670007). The entire metagenomic dataset has been uploaded to the European Nucleotide Archive (primary accession PRJEB22949). A subset of these data have been used for a project to identify human herpesvirus 6 (HHV-6) in clinical samples; this manuscript is available on BioRxiv (https://doi.org/10.1101/236083).
This study was approved through the UK integrated research application system (REC reference 14/LO/1077).