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Genomes used to infer a tree of life in Hug et al. (2016) - part I

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posted on 27.12.2018, 18:37 authored by Laetitia WilkinsLaetitia Wilkins, Cassandra EttingerCassandra Ettinger, Guillaume JospinGuillaume Jospin, Jonathan EisenJonathan Eisen
This directory contains 1859 genomes downloaded from NCBI. There are 3859 genomes in total. The other 2000 genomes can be found in part II. Genome IDs from Hug et al.'s supplementary table 1 were used as queries.

Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48

A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts

Christopher Brown and Laura Hug assisted us with the download of this dataset.

Hug_taxIDmap.txt shows the key from genome ID to taxon ID.

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