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Hufford_et_al._2012_genestats_LR.txt (1.41 MB)
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Hufford_et_al._2012_genestats_MZ.txt (1.41 MB)
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Hufford_et_al._2012_genestats_TEO.txt (1.41 MB)
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README.txt (5.52 kB)
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Hufford_et_al._2012_10kb_statistics.txt (72.62 MB)
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Popgen Stats from Hufford et al. 2012 Nat. Gen.
Version 7 2013-07-27, 19:22
Version 6 2013-07-27, 19:22
Version 5 2013-07-27, 19:56
Version 4 2013-07-27, 19:56
Version 3 2013-07-27, 19:22
Version 2 2013-07-27, 19:22
Version 1 2013-07-17, 19:09
dataset
posted on 2013-07-27, 19:22 authored by Jeffrey Ross-IbarraJeffrey Ross-IbarraSummary statistics for 10kb windows genome-wide and for genes in the maize v2 filtered gene set. Data are from Hufford et al. 2012:
http://www.nature.com/ng/journal/v44/n7/full/ng.2309.html
See details in the paper for criteria for calling SNPs, data used for statistics, etc.
Columns are:
locus: GRM name of gene in the filtered gene set
S: number of Segregating sites
ThetaW: Watterson's estimate of theta (per locus)
ThetaPi: nucleotide diversity (per locus)
ThetaH: Fay and Wu (2000) estimator (per locus)
TajD: Tajima's D
seqbp: # of bp sequenced. this should be used as the denominator to calculate per bp. values of the above statistics.
