JR
Publications
- Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution DOI: 10.1186/gb-2013-14-1-r10
- Comparative population genomics of maize domestication and improvement DOI: 10.1038/ng.2309
- Crop genomics: Advances and applications DOI: 10.1038/nrg3097
- Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels DOI: 10.1104/pp.111.185033
- Historical genomics of North American maize DOI: 10.1073/pnas.1209275109
- Maize HapMap2 identifies extant variation from a genome in flux DOI: 10.1038/ng.2313
- Megabase-scale inversion polymorphism in the wild ancestor of maize DOI: 10.1534/genetics.112.138578
- Reshaping of the maize transcriptome by domestication DOI: 10.1073/pnas.1201961109
- Teosinte as a model system for population and ecological genomics DOI: 10.1016/j.tig.2012.08.004
- Genetic signals of origin, spread, and introgression in a large sample of maize landraces DOI: 10.1073/pnas.1013011108
- Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians DOI: 10.1093/gbe/evr008
- Identification of a functional transposon insertion in the maize domestication gene tb1 DOI: 10.1038/ng.942
- Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis) DOI: 10.1111/j.1365-294X.2010.04924.x
- A role for nonadaptive processes in plant genome size evolution? DOI: 10.1111/j.1558-5646.2010.00967.x
- Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis) DOI: 10.1111/j.1365-294X.2010.04559.x
- Genetic diversity in a crop metapopulation DOI: 10.1038/hdy.2009.110
- Indel-associated mutation rate varies with mating system in flowering plants DOI: 10.1093/molbev/msp249
- Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae) DOI: 10.1534/genetics.110.115543
- Reproductive biology of macleania rupestris (ericaceae), a pollen-limited neotropical cloud-forest species in Costa Rica DOI: 10.1017/S0266467410000064
- Widespread gene conversion in centromere cores DOI: 10.1371/journal.pbio.1000327
- A first-generation haplotype map of maize DOI: 10.1126/science.1177837
- A pleistocene clone of palmer's oak persisting in Southern California DOI: 10.1371/journal.pone.0008346
- Historical divergence and gene flow in the genus Zea DOI: 10.1534/genetics.108.097238
- Selection on grain shattering genes and rates of rice domestication DOI: 10.1111/j.1469-8137.2009.02984.x
- Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata DOI: 10.1073/pnas.0804671105
- Multiple domestications do not appear monophyletic DOI: 10.1073/pnas.0809042105
- Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata DOI: 10.1371/journal.pone.0002411
- Selection on major components of angiosperm genomes DOI: 10.1126/science.1153586
- Genome size and recombination in angiosperms: A second look DOI: 10.1111/j.1420-9101.2006.01275.x
- Plant domestication, a unique opportunity to identify the genetic basis of adaptation DOI: 10.1073/pnas.0700643104
- Mitochondrial DNA and population size [4] DOI: 10.1126/science.314.5804.1388
- Quantitative trait loci and the study of plant domestication DOI: 10.1007/s10709-004-2744-6
- The Evolution of Recombination under Domestication: A Test of Two Hypotheses DOI: 10.1086/380606
- Origin and domestication of the chaya (Cnidoscolus aconitifolius Mill I. M. Johnst): The Mayan spinach | Origen y domesticación de la chaya (Cnidoscolus aconitifolius Mill I. M. Johnst): La espinaca Maya DOI: 10.1525/msem.2003.19.2.287
- Genetic Data Analysis II. Methods for Discrete Population Genentic Data DOI: 10.1663/0013-0001(2002)056[0216:GDAIMF]2.0.CO;2
- The ethnobotany of chaya (Cnidoscolus aconitifolius ssp. aconitifolius Breckon): A nutritious Maya vegetable
- Implications of mating patterns for conservation of the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae)
- Using Nextgen Sequencing to Investigate Genome Size Variation and Transposable Element Content DOI: 10.1007/978-3-642-31842-9_3
- Adaptation in plant genomes: bigger is different
- Diversity and evolution of centromere repeats in the maize genome
- Adaptation in plant genomes: Bigger is different
- The pattern and distribution of deleterious mutations in maize
- Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport
- Extending the Stress-Gradient hypothesis: increased local adaptation between teosinte and soil biota at the stressful end of a climate gradient
- Agriculture: feeding the future
- A test of ecological and ethnolinguistic determinants of maize diversity in southern Mexico
- Transposable elements contribute to activation of maize genes in response to abiotic stress
- Reply to Brush et al.: Wake-up call for crop conservation science
- Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species
- Advances and limits of using population genetics to understand local adaptation
- From Many, One: Genetic Control of Prolificacy during Maize Domestication
- Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays
- Complex patterns of local adaptation in teosinte
- The origin and evolution of maize in the Southwestern United States
- Natural variation in teosinte at the domestication locus teosinte branched1 (tb1)
- Construction of the third generation Zea mays haplotype map
- ANGSD-wrapper
- Genetic, evolutionary and plant breeding insights from the domestication of maize
- Diversity and evolution of centromere repeats in the maize genome
- Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays
- Not so local: the population genetics of convergent adaptation in maize and teosinte
- The Temporal Dynamics of Background Selection in Nonequilibrium Populations
- Evolutionary Genomics of Peach and Almond Domestication
- Evolutionary insights into plant breeding
- Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima
- Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima
- Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
- The Genomic Ecosystem of Transposable Elements in Maize
- Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens
- The temporal dynamics of background selection in non-equilibrium populations
- Dynamic patterns of transcript abundance of transposable element families in maize
- Natural variation in teosinte at the domestication locus teosinte branched1 (tb1)
- The genomic impacts of drift and selection for hybrid performance in maize
- Selective sorting of ancestral introgression in maize and teosinte along an elevational cline
- High quality maize centromere 10 sequence reveals evidence of frequent recombination events
- Construction of the third generation Zea mays haplotype map
- Evolutionary and functional genomics of DNA methylation in maize domestication and improvement
- Modeling Allelic Diversity of Multi-parent Mapping Populations Affects Detection of Quantitative Trait Loci
- Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces
- Genetic, evolutionary and plant breeding insights from the domestication of maize
- Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize
- ANGSD-wrapper: utilities for analyzing next generation
- Transposable elements contribute to dynamic genome content in maize
- Independent molecular basis of convergent highland adaptation in maize
- Evolutionary genomics of peach and almond domestication
- Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero Toluqueño
- Transposable elements contribute to dynamic genome content in maize
- Selective loss of diversity in doubled-haploid lines from European maize landraces
- Quantitative trait loci and the study of plant domestication
- Teosinte as a model system for population and ecological genomics
- Genetic signals of origin, spread, and introgression in a large sample of maize landraces
- Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels
- A role for nonadaptive processes in plant genome size evolution?
- Genome size and recombination in angiosperms: A second look
- Historical divergence and gene flow in the genus Zea
- Identification of a functional transposon insertion in the maize domestication gene tb1
- Indel-associated mutation rate varies with mating system in flowering plants
- Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
- The genomic signature of crop-wild introgression in maize
- Crop genomics: advances and applications
- Population genetics and ethnobotany of cultivated Diospyros riojae Gómez Pompa (Ebenaceae), an endangered fruit crop from Mexico
- Historical genomics of North American maize
- Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels
- Genome size and recombination in angiosperms: a second look
- Historical divergence and gene flow in the genus Zea
- Genetic signals of origin, spread, and introgression in a large sample of maize landraces
- Multiple domestications do not appear monophyletic
- Maize HapMap2 identifies extant variation from a genome in flux
- Comparative population genomics of maize domestication and improvement
- Genetic diversity in a crop metapopulation
- The genomic impacts of drift and selection for hybrid performance in maize
- Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae)
- Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians
- Mitochondrial DNA and population size
- Identification of a functional transposon insertion in the maize domestication gene tb1
- Widespread gene conversion in centromere cores
- Indel-associated mutation rate varies with mating system in flowering plants
- Megabase-scale inversion polymorphism in the wild ancestor of maize
- Reproductive biology of macleania rupestris (ericaceae), a pollen-limited neotropical cloud-forest species in Costa Rica
- A first-generation haplotype map of maize
- A pleistocene clone of palmer's oak persisting in Southern California
- Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae)
- Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis)
- Historical genomics of North American maize
- Mitochondrial DNA and population size [4]
- Crop genomics: Advances and applications
- Genetic diversity in a crop metapopulation
- Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis)
- Selection on major components of angiosperm genomes
- Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
- Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians
- Multiple domestications do not appear monophyletic
- Maize HapMap2 identifies extant variation from a genome in flux
- Reshaping of the maize transcriptome by domestication
- Plant domestication, a unique opportunity to identify the genetic basis of adaptation
- Selection on grain shattering genes and rates of rice domestication
- Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata
- Comparative population genomics of maize domestication and improvement
- Genetic Data Analysis II. Methods for Discrete Population Genentic Data
- Origin and domestication of the chaya (Cnidoscolus aconitifolius Mill I. M. Johnst): The Mayan spinach | Origen y domesticación de la chaya (Cnidoscolus aconitifolius Mill I. M. Johnst): La espinaca Maya
- The Evolution of Recombination under Domestication: A Test of Two Hypotheses
- Using Nextgen Sequencing to Investigate Genome Size Variation and Transposable Element Content
- GBS of highland and lowland maize
- Gene Popgen Stats from Hufford et al. 2012 Nat. Gen.
- Population Genetics and Ethnobotany of Cultivated Diospyros riojae Gómez Pompa (Ebenaceae), an Endangered Fruit Crop from Mexico
- Recombination rho in maize
- The evolution of recombination under domestication: a test of two hypotheses
- Origen y domesticación de la chaya (Cnidoscolus aconitifolius Mill IM Johnst): La espinaca Maya