Early Indicator for Data Sharing and Reuse - Supplementary Tables.xlsx

dataset

posted on 2023-04-28, 19:27 authored by Agata Piekniewska, Laurel HaakLaurel Haak, Darla Henderson, Katherine McNeill, Anita BandrowskiAnita Bandrowski, Yvette Seger

These data were generated for an investigation of research data repository (RDR) mentions in biuomedical research articles.

Supplementary Table 1 is a discrete subset of SciCrunch RDRs used to study RDR mentions in biomedical literature. We generated this list by starting with the top 1000 entries in the SciCrunch database, measured by citations, removed entries for organizations (such as universities without a corresponding RDR) or non-relevant tools (such as reference managers), updated links, and consolidated duplicates resulting from RDR mergers and name variations. The resulting list of 737 RDRs is shown in with as a base based on a source list of RDRs in the SciCrunch database. The file includes the Research Resource Identifier (RRID), the RDR name, and a link to the RDR record in the SciCrunch database.

Supplementary Table 2 shows the RDRs, associated journals, and article-mention pairs (records) with text snippets extracted from mined Methods text in 2020 PubMed articles. The dataset has 4 components. The first shows the list of repositories with RDR mentions, and includes the Research Resource Identifier (RRID), the RDR name, the number of articles that mention the RDR, and a link to the record in the SciCrunch database. The second shows the list of journals in the study set with at least 1 RDR mention, andincludes the Journal ID, nam, ESSN/ISSN, the total count of publications in 2020, the number of articles that had text available to mine, the number of article-mention pairs (records), number of articles with RDR mentions, the number of unique RDRs mentioned, % of articles with minable text. The third shows the top 200 journals by RDR mention, normalized by the proportion of articles with available text to mine, with the same metadata as the second table. The fourth shows text snippets for each RDR mention, and includes the RRID, RDR name, PubMedID (PMID), DOI, article publication date, journal name, journal ID, ESSN/ISSN, article title, and snippet.