An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster

Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas". Includes:

Data from Sutherland et al. 2020, not originally uploaded and uploaded with permission from primary author:

- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)

- populations.snps.vcf (as above, but VCF format)

New data, multilocus genotypes from the pilot study from the present analysis:

- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)

- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)

- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script)