Ben Sutherland

Publications

• Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss ISSN: 0962-1083
• Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis DOI: 10.1186/1471-2164-15-200
• Characterization of the infectious hematopoietic necrosis virus (IHNV) carrier state in sockeye salmon (Oncorhynchus nerka) DOI: 10.1016/j.fsi.2013.03.102
• Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis DOI: 10.1016/j.fsi.2012.11.031
• Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress ISSN: 0962-1083
• Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections DOI: 10.1016/j.cbd.2011.04.001
• GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets DOI: 10.1186/1756-0500-4-267
• Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka) DOI: 10.1186/1472-6785-11-31
• Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps
• Sex matters in Massive Parallel Sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems
• Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char
• Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere
• Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis)
• Migration Harshness Drives Habitat Choice And Local Adaptation In Anadromous Arctic Char: Evidence From Integrating Population Genomics And Acoustic Telemetry
• Genomic patterns of diversity and divergence of two introduced salmonid species in Patagonia, South America
• Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar suggests increased parasite fitness
• Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance
• Infectious hematopoietic necrosis virus (IHNV) persistence in Sockeye Salmon: influence on brain transcriptome and subsequent response to the viral mimic poly(I:C)
• Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis
• Sex Chromosome Evolution, Heterochiasmy, and Physiological QTL in the Salmonid Brook Charr Salvelinus fontinalis
• Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere
• Identification of hypoxia-specific biomarkers in salmonids using RNA-sequencing and validation using high-throughput qPCR
• Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis
• Population structure of eulachon Thaleichthys pacificus from Northern California to Alaska using single nucleotide polymorphisms from direct amplicon sequencing
• Comparative Genomic Analyses and a Novel Linkage Map for Cisco (Coregonus artedi) Provide Insights into Chromosomal Evolution and Rediploidization Across Salmonids
• Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provide insights into chromosomal evolution and rediploidization across salmonids
• In‐field genetic stock identification of overwintering coho salmon in the Gulf of Alaska: Evaluation of Nanopore sequencing for remote real‐time deployment
• Combining metabarcoding and morphological approaches to identify phytoplankton taxa associated with harmful algal blooms
• Nsil1-Msp1 RAD-digest Detailed Protocol v1
• Nsil1-Msp1 RAD-digest Detailed Protocol v2
• 1% Agarose Gel Electrophoresis Prep v1
• Population differences in Chinook salmon ( Oncorhynchus tshawytscha ) DNA methylation: Genetic drift and environmental factors
• Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment
• GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets
• Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss
• Characterization of the infectious hematopoietic necrosis virus (IHNV) carrier state in sockeye salmon (Oncorhynchus nerka)
• Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress
• Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)
• Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis
• Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections
• Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis
• Sex matters in massive parallel sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems
• In-field genetic stock identification of overwintering coho salmon in the Gulf of Alaska: Evaluation of Nanopore sequencing for remote real-time deployment
• Effects of ancient anthropogenic clam gardens on the growth, survival, and transcriptome of Pacific littleneck clams (Leukoma staminea)
• Population genomics of harbour sealPhoca vitulinafrom northern British Columbia through California and comparison to the western Atlantic sub-species
• Genomic diversity of wild and cultured Yesso scallopMizuhopecten yessoensisfrom Japan and Canada
• Population genomics of harbour sealPhoca vitulinafrom northern British Columbia through California and comparison to the Atlantic subspecies
• An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster
• Population differences in Chinook salmon (Oncorhynchus tshawytscha) DNA methylation: Genetic drift and environmental factors
• Genomic diversity of wild and cultured Yesso scallop Mizuhopecten yessoensis from Japan and Canada
• Population genomics of harbour seal Phoca vitulina from northern British Columbia through California and comparison to the Atlantic subspecies
• Loss of genetic variation and sex determination system in North American northern pike characterized by whole-genome resequencing
• Population structure of eulachonThaleichthys pacificusfrom Northern California to Alaska using single nucleotide polymorphisms from direct amplicon sequencing
• Loss of genetic variation and ancestral sex determination system in North American northern pike characterized by whole-genome resequencing
• Mapping Biodiversity Coast‐to‐Coast‐to‐Coast Across Canada's Three Oceans Using eDNA Metabarcoding
• The presence of the Pacific Oyster OSHV-1 resistance marker on chromosome 8 does not impact susceptibility to infection by Vibrio aestuarianus
• The presence of the Pacific Oyster OSHV-1 resistance marker on chromosome 8 does not impact susceptibility to infection by Vibrioaestuarianus
• A free lunch: microhaplotype discovery in an existing amplicon panel improves parentage assignment for the highly polymorphic Pacific oyster
• Pedigree-based genome-wide imputation using a low-density amplicon panel for the highly polymorphic Pacific oysterCrassostrea(Magallana)gigas
• The presence of the Pacific oyster OsHV-1 resistance marker on chromosome 8 does not impact susceptibility to infection by Vibrio aestuarianus
• The presence of the Pacific oyster OsHV-1 resistance marker on chromosome 8 does not impact susceptibility to infection byVibrio aestuarianus