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AMPHORA software for automated phylogenomic analysis

posted on 14.06.2013, 00:59 authored by Jonathan EisenJonathan Eisen

AMPHORA is an Automated Phylogenomic Inference Pipeline for bacterial sequences. From a given a set of protein sequences, it automatically identifies 31 phylogenetic marker genes. It then generates high-quality multiple sequence alignments for these genes and make tree-based phylotype assignments.