Data files for OR analysis.zip (2.58 MB)
Data files for OR analysis
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dataset
modified on 2016-09-15, 10:19 List of the raw data files used for the OR anlalysis:
1) Full length sequences of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (the file Contains a total of 2615 sequences that include all ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs used for the phylogeneitc analysis shownn in Figure 4)
2) Full length alignment of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs.aln (Full lenght alignment file of all 2615 sequences created using Mafft alignment software)
3) Trimmed alignment of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs used for making tree toplogy (This alignment file is a manually trimmed version of the full lenght alignment and contains only the conserved blocks of seven transmenbrane segment used for making the tree topology shown in Figure 4)
4) MEGA formatted alignment file of trimmed ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (This is a MEGA formatted file of the trimmed alignment used for making the tree toplogy shown in Figure 4)
5) Newick tree file of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (Newick formatted original tree file of the phylogentic tree: figure 4)
6) Tree Summary file of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (Summary file contains the settings and parameters used for computing a maximul likelihood phylogentic tree: figure 4)
1) Full length sequences of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (the file Contains a total of 2615 sequences that include all ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs used for the phylogeneitc analysis shownn in Figure 4)
2) Full length alignment of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs.aln (Full lenght alignment file of all 2615 sequences created using Mafft alignment software)
3) Trimmed alignment of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs used for making tree toplogy (This alignment file is a manually trimmed version of the full lenght alignment and contains only the conserved blocks of seven transmenbrane segment used for making the tree topology shown in Figure 4)
4) MEGA formatted alignment file of trimmed ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (This is a MEGA formatted file of the trimmed alignment used for making the tree toplogy shown in Figure 4)
5) Newick tree file of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (Newick formatted original tree file of the phylogentic tree: figure 4)
6) Tree Summary file of ambulacrarian rhodopsin GPCRs, and Brachiostoma and Actinopterygii ORs (Summary file contains the settings and parameters used for computing a maximul likelihood phylogentic tree: figure 4)
