Supplementary_method_result_vivax(supp.4)

Supplementary information for "Derivation of Plasmodium vivax SNP sets." 

The supplementary contains:

• The detailed description of analysis performed 
• 4.1 - The table mapping concatenated SNPs' FASTA numbering to the chromosome and its relative position within the chromosome
• 4.2 - The derived SNP set to discriminate K2 strain with ambiguity codes excluded
• 4.3 -  All single-member SNP sets that could completely distinguish K2 isolates with ambiguity codes excluded
• 4.4 - The derived SNP set to discriminate Malaysian strain with ambiguity codes excluded
• 4.5 - The derived SNP set to discriminate Malaysian strain with ambiguity codes transformed
• 4.6 - Scripts to validate the derived SNP set with ambiguity codes transformed and identifying the untypeable sequences
• 4.7 - The derived SNP set (simpson mode) with ambiguity codes excluded
• 4.8 - The derived SNP set (simpson mode) with ambiguity codes excluded and only 80% of the specimens
• 4.9 - The derived SNP set (simpson mode) with ambiguity codes transformed
• 4.10 - The derived SNP set (simpson mode) with ambiguity codes transformed and only 80% of the specimens
• 4.11 - Visualisation of selected genotype profiles with the best derived SNP sets