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A1_mNaive_TRB.txt (3.34 MB)
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A1_nTreg_TRB.txt (4.74 MB)
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A1_RTE_TRB.txt (2.13 MB)
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A2_mNaive_TRB.txt (6.73 MB)
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A2_nTreg_TRB.txt (7.43 MB)
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A2_RTE_TRB.txt (4.53 MB)
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B1_mNaive_TRB.txt (5.48 MB)
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B1_nTreg_TRB.txt (3.97 MB)
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B1_RTE_TRB.txt (5.59 MB)
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B2_mNaive_TRB.txt (8.61 MB)
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B2_nTreg_TRB.txt (4.79 MB)
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B2_RTE_TRB.txt (4.54 MB)
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C1_mNaive_TRB.txt (4.85 MB)
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C1_nTreg_TRB.txt (3.12 MB)
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C1_RTE_TRB.txt (5.95 MB)
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C2_mNaive_TRB.txt (4.59 MB)
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C2_nTreg_TRB.txt (4.03 MB)
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C2_RTE_TRB.txt (5.52 MB)
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E1_mNaive_TRB.txt (4.29 MB)
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E1_nTreg_TRB.txt (3.76 MB)
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TCR beta repertoires in naive CD4+ T cell subsets in identical twin donor samples
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dataset
modified on 2020-01-30, 11:31 TCR repertoire datasets for sorted naive CD4+ T cell subsets.
Includes metadata and preprocessed clonesets for sorted naive CD4+ T cell subsets: naive Treg, CD31+-enriched (recent thymic emigrates, RTE subset), CD31- naive subset (non-RTE subset, mature naive CD4+ T cells).
Naive T cell subsets were sorted from 5 pairs of identical twins, all 28-35 years old males; and two more healthy donors (not twins).
Each sample is presented in txt file: TCR beta cloneset tab-delimited table, VDJtools software format.
Raw sequencing fastq data was processed with using MIGEC v.1.2.9 (threshold 1 UMI for CDR3-containing clonotype), aligned with MiXCR v.2.1.1. In-frame TCR CDR3 repertoires were extracted with VDJtools v. 1.2.1.
