MAGICC vertex-level gene expression data
Vertex-level expression data from the Multiscale Atlas of Gene Expression for Integrative Cortical Cartography
Files include:
Template cortical surface meshes for flat, inflated and very_inflated surfaces with 32k vertices
fs_LR.32k.L.flat.surf.gii
fs_LR.32k.L.inflated.surf.gii
fs_LR.32k.L.very_inflated.surf.gii
Glasser_2016.32k.L.label.gii - parcellation of fs_LR 32k surface according to Glasser et al., 2016 Nature.
ahba_vertex.npy - Atlas of cortical gene expression for 20,781 genes at 32k vertex locations
ahba_vertex_gradients.npy - Atlas of cortical gene expression gradients for 20,781 genes at 32k vertex locations
SuppTable2.csv - Gene-level characterisations for 20,781 in the same order as the above files. Includes gene symbol, alongside many other annotations described in the manuscript.
Example to code to analyse these data can be found at:
https://github.com/kwagstyl/magicc
Funding
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I have considered whether the data to be published may be licensed commercially before deciding to freely release it to the public. Further information and advice may be sought from UCL Business https://www.uclb.com/about/our-people/
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