Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution

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modified on 2017-01-09, 12:11

The code, dataset and result of paper Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution. Analysis_Co_TF_Code.zip include python code used in our experiment. Analysis_Co_TF_Dataset.zip include the 13 ChIP-seq datasets and TRANSFAC motifs.

Mouse Genome data can be accessed from http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/

Analysis_Co_TF_Result.zip is the result of our method on the 13 ChIP-seq datasets.

Funding

National Science Foundation of China (NSFC 61402326), Peiyang Scholar Program of Tianjin University (2016XRG-0009), Tianjin Research Program of Application Foundation and Advanced Technology (16JCQNJC00200)

Keywords

co-TFs ChIP-seq peak-like distribution ordered adjacency difference Bioinformatics Bioinformatics Software

Licence

MIT

Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution

Funding

National Science Foundation of China (NSFC 61402326), Peiyang Scholar Program of Tianjin University (2016XRG-0009), Tianjin Research Program of Application Foundation and Advanced Technology (16JCQNJC00200)

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Keywords

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