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MCA2.0 DGE Data

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modified on 2022-09-22, 05:30

MCA2.0_Fig1_adata.h5ad: contains both raw count and normalized datasets for 520,801 cells in MCDA, which can be processed into the python environment with SCANPY directly.

dge_raw_data.zip: contains separate raw count matrices for ten mouse tissues (brain, heart, lung, liver, kidney, stomach, intestine, pancreas, testis, and uterus) at seven life stages (E10.5Day, E12.5Day, E14.5Day, P0, P10, P21, and Adult).

MCA2.0_cell_info.csv: contains the cell annotations for 520801 cells in MCDA, including UMAP coordinates, development stages, tissue origins, lineages, and cell-type annotations in both 95 clusters and tissues per stage.

Funding

This work is support by National Natural Science Foundation of China (grant nos. 31930028 to G.G., 31871473 to X.H., 31922049 to X.H., 91842301 to G.G., 32001068 to H.C. and 32000461 to J.W.), the Funds for Creative Research Groups of China (grant no. T2121004 to G.G.), National Key Research and Development Program (grant nos. 2018YFA0107804 to G.G., 2018YFA0107801 to X.H. and 2018YFA0800503 to G.G.); and Fundamental Research Funds for the Central Universities (to G.G.).

    Categories

    Keywords

    Cell atlasBioinformatics

    Licence

    CC BY 4.0