TCR repertoires in human CD4+ T cell subsets: Effector/memory subsets, TCR alpha & TCR beta chain sequencing
TCR repertoire datasets for sorted helper T cell subsets.
Includes metadata and preprocessed clonesets for eight sorted effector/memory T cell subsets: Tfh, Th1, Th17, Th1-17, Th22, Th2, Th2a, Treg.
CD4+ T cell subsets were sorted from 5 healthy donors PBMC samples.
Each sample is presented in two txt files: TCR alpha cloneset file and a separate TCR beta cloneset file.
Raw sequencing fastq data was processed with using MIGEC v.1.2.9 (Quality: threshold 3 different UMI sequences for each CDR3-containing clonotype), aligned with MiXCR v.2.1.1. In-frame TCR CDR3 repertoires were extracted with VDJtools v. 1.2.1.
Cloneset tables are in VDJtools software format: tab-delimited text files.