Robust Between-Hospital Microbiota-Based Diagnostics for Inflammatory Bowel Disease
This collection is shared privately
This is the repository for the 4 datasets used in this study:
- A3130: The original dataset. A cohort of 149 individuals (58 healthy children, 91 pediatric IBD patients). This sample set was processed and analyzed in Amsterdam, the Netherlands, using an ABI PRISM 3130 Genetic Analyzer. This dataset was used to generate the following 3 extra datasets.
- SIM: A large synthetic dataset (n=10,000), generated using a Gaussian mixture model.
- A3500: A replicate dataset. DNA isolates were re-processed in the same lab as the original samples using a different machine (ABI 3500 Genetic Analyzer).
- M3500; A second replicate dataset. The DNA isolates were re-processed in a different lab than the original samples also using a different machine (ABI 3500 Genetic Analyzer).
Each dataset was uploaded as an RData object with two attributes: data - holds the count data of OTU abundances. Rows are samples and columns are OTUs; labels - a corresponding label for each sample in data.
COLLECTION SIZE
4.51 MB