MGEN2020 - Visualising variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualise pneumococcal isolates

Posted on 18.02.2020 - 14:43 by GlobalPneumoSeq Sanger

Knowledge of pneumococcal lineages, their geographical distribution and antibiotic resistance patterns can give insights into global pneumococcal disease. To facilitate any potential subsequent analyses and reach the findings to a wider community, here we provide the input and output of the following analyses:


Time-measured phylogeny by BacDating

Pan genome analysis by Roary

Recombination masked alignments by Gubbins

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Sanger, GlobalPneumoSeq (2020): MGEN2020 - Visualising variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualise pneumococcal isolates. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.4860771.v1
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Bill and Melinda Gates Foundation

Wellcome Trust

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