BridgeDb Gene-to-variant mapping database archive
Version 3 2020-03-06, 11:28
Version 2 2019-04-17, 07:04
Version 1 2018-11-12, 12:13
Posted on 2020-03-06 - 11:28 authored by Friederike Ehrhart
Database identifier mapping services are important to make database
information interoperable. BridgeDb offers such a service. Available
mapping for BridgeDb link 1. genes and gene products identifiers, 2.
metabolite identifiers and InChI structure description, and 3.
identifiers for biochemical reactions and interactions between multiple
resources that use such IDs while the mappings are obtained from
multiple sources. In this study we created BridgeDb mapping databases
for selections of genes-to-variants (and variants-to-genes) based on the
variants described in Ensembl. Moreover, we demonstrated the use of
these mappings in different software tools like R, PathVisio, Cytoscape
and a local installation using Docker. The variant mapping databases are
now described on the BridgeDb website and are available from the BridgeDb mapping database repository and updated according to the regular BridgeDb mapping update schedule.
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Ehrhart, Friederike; Willighagen, Egon; Kutmon, Martina; Mélius, Jonathan; T. Evelo, Chris; L Coort, Susan; et al. (2018). BridgeDb Gene-to-variant mapping database archive. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.4290308.v3
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