Biochemistry and cell biology

RSS feed

AllSEARCH

sort by:

DATASET

Supplementary Dataset D1: AlphaFold3-Predicted VHH–EGFR Complexes

dataset posted on 2025-06-12

DATASET

Melbournevirus protein structure prediction - AlphaFold3

dataset posted on 2025-06-11

Lars Mühlberg

DATASET

3D protein structures for all 26 maize Nested Association Mapping (NAM) founder lines predicted by AlphaFold2

dataset posted on 2025-06-06 in Figshare+

SOFTWARE

Custom scripts for analysis of MD simulations run in Schrödinger/Desmond (Warnock et al.)

software posted on 2025-06-06

Mina Henes

DATASET

Data related to Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

dataset posted on 2025-06-06

DATASET

Native MS for G6P binding

dataset posted on 2025-06-06

Yi-An Chen

DATASET

The clinical missense variant E282K in PPP3CA/calcineurin

dataset posted on 2025-06-05

DATASET

Structural models of CrV-01T cryptic ORFs and homologs of ORF 65

dataset posted on 2025-06-04

Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of mouse choroid plexus (jrc_mus-choroid-plexus-3)

dataset posted on 2025-06-04 in Janelia Research Campus

scMitoV

figure posted on 2025-05-31

Supporting Data For 'Disease-Associated Amyloid-β Filaments in Biliary Atresia, an Incurable Liver Disease in Infants'

dataset posted on 2025-05-30 in HKU Data Repository

Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of Mouse hippocampus (jrc_mus-hippocampus-2)

dataset posted on 2025-05-22 in Janelia Research Campus

Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of Mouse hippocampus (jrc_mus-hippocampus-3)

dataset posted on 2025-05-22 in Janelia Research Campus

Catalan et al.Supplemental Material.AJP.25.pdf

dataset posted on 2025-05-22

Permanent

FILES UNDER EMBARGO

Supporting data for Dynamic Pipsqueak Amyloid Regulates Polycomb Complex Activity in Drosophila Embryos

dataset posted on 2025-05-22 in HKU Data Repository

DATASET

Dynamics of S-phase kinase protein 1 (Skp1)

dataset posted on 2025-05-19 in Brunel University London

Sarath Dantu

Fig. 12B - Structural prediction of the putative 1st, 2nd TM domains, and Nogo-66 for Nogo-B

dataset posted on 2025-05-18

Fig. 12A - Predicted local distance difference test (pLDDT) of Nogo-B from AlphaFold-3

media posted on 2025-05-18

DATASET

AF3 models of virus-virus, virus-host and host-host dimers from HSV-1 infected cells.

dataset posted on 2025-05-16

Boris Bogdanow

list of folders and file names

dataset posted on 2025-05-07

Luo

DATASET

7. Fig 2e map and model in Fig 3l_12 bp_D_loop

dataset posted on 2025-05-07

Luo

DATASET

6. Fig 2d map and model in Fig 3h_8 bp_D_loop

dataset posted on 2025-05-07

Luo

DATASET

5. Fig 2c map and model in Fig 3c_4 bp_D_loop

dataset posted on 2025-05-07

Luo

DATASET

4. Fig 2b density map

dataset posted on 2025-05-07

Luo

DATASET

3. Fig 2a density map

dataset posted on 2025-05-07

Luo

DATASET

2. Fig 1d map and model_postsynaptic

dataset posted on 2025-05-07

Luo

DATASET

1. Fig 1c map and model_presynaptic

dataset posted on 2025-05-07

Oscillatory Field Genesis: The Emergent Architecture of Spacetime, Matter, and Memory

dataset posted on 2025-05-05

Drippy Stone

<b>Conformational transition of KRAS</b><sup><strong>G12C </strong></sup><b>from being bound to sotorasib to divarasib.</b>

Conformational transition of KRAS^G12Cfrom being bound to sotorasib to divarasib.

media posted on 2025-05-03

Micah Fernando

P-type ATPase Magnesium Transporter MgtA Acts as a Dimer

figure posted on 2025-05-01

DATASET

DNA knots, catenanes, and replication intermediates via high-resolution AFM

dataset posted on 2025-04-30 in The University of Sheffield

10months

14days

FILES UNDER EMBARGO

Exploring the Structure and Dynamics of Amylin Receptors

thesis posted on 2025-04-29 in Monash University

Cameron James Fairweather

DATASET

A low-complexity linker as a driver of intra- and intermolecular interactions in DNAJB chaperones

dataset posted on 2025-04-29

Molecular mechanism of the type I-B2 CRISPR-associated transposon system

thesis posted on 2025-04-29 in Purdue University Graduate School

Shukun Wang

DATASET

a 4.53 A resolution density map in Fig. 2a and a 3.23 A resolution map in Fig. 2b

dataset posted on 2025-04-28

DATASET

Source Data

dataset posted on 2025-04-27

Luo

CRYO-EM STRUCTURAL STUDIES OF AMYLOID FIBRILS FROM HUMAN NEURODEGENERATIVE DISEASES

thesis posted on 2025-04-26 in Purdue University Graduate School

Md R Hoq

FIGURE

Figure S8: Horizontal genome tree of PqqU producers.

figure posted on 2025-04-25

CHARACTERIZING THIOESTERASES FOR BIOCATALYTIC PEPTIDE MACROCYCLIZATION

thesis posted on 2025-04-24 in Purdue University Graduate School

Zachary Logan Budimir

Data associated with "Defining essential charged residues in fibril formation of a lysosomal derived N-terminal alpha-synuclein truncation

dataset posted on 2025-04-23 in National Heart, Lung, and Blood Institute

Biochemistry and cell biology

Supplementary Dataset D1: AlphaFold3-Predicted VHH–EGFR Complexes

Melbournevirus protein structure prediction - AlphaFold3

3D protein structures for all 26 maize Nested Association Mapping (NAM) founder lines predicted by AlphaFold2

Custom scripts for analysis of MD simulations run in Schrödinger/Desmond (Warnock et al.)

Data related to Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

Native MS for G6P binding

The clinical missense variant E282K in PPP3CA/calcineurin

Structural models of CrV-01T cryptic ORFs and homologs of ORF 65

Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of mouse choroid plexus (jrc_mus-choroid-plexus-3)

scMitoV

Supporting Data For 'Disease-Associated Amyloid-β Filaments in Biliary Atresia, an Incurable Liver Disease in Infants'

Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of Mouse hippocampus (jrc_mus-hippocampus-2)

Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of Mouse hippocampus (jrc_mus-hippocampus-3)

Catalan et al.Supplemental Material.AJP.25.pdf

Supporting data for Dynamic Pipsqueak Amyloid Regulates Polycomb Complex Activity in Drosophila Embryos

Dynamics of S-phase kinase protein 1 (Skp1)

Fig. 12B - Structural prediction of the putative 1st, 2nd TM domains, and Nogo-66 for Nogo-B

Fig. 12A - Predicted local distance difference test (pLDDT) of Nogo-B from AlphaFold-3

AF3 models of virus-virus, virus-host and host-host dimers from HSV-1 infected cells.

list of folders and file names

7. Fig 2e map and model in Fig 3l_12 bp_D_loop

6. Fig 2d map and model in Fig 3h_8 bp_D_loop

5. Fig 2c map and model in Fig 3c_4 bp_D_loop

4. Fig 2b density map

3. Fig 2a density map

2. Fig 1d map and model_postsynaptic

1. Fig 1c map and model_presynaptic

Oscillatory Field Genesis: The Emergent Architecture of Spacetime, Matter, and Memory

Conformational transition of KRASG12C from being bound to sotorasib to divarasib.

P-type ATPase Magnesium Transporter MgtA Acts as a Dimer

DNA knots, catenanes, and replication intermediates via high-resolution AFM

Exploring the Structure and Dynamics of Amylin Receptors

A low-complexity linker as a driver of intra- and intermolecular interactions in DNAJB chaperones

Molecular mechanism of the type I-B2 CRISPR-associated transposon system

a 4.53 A resolution density map in Fig. 2a and a 3.23 A resolution map in Fig. 2b

Source Data

CRYO-EM STRUCTURAL STUDIES OF AMYLOID FIBRILS FROM HUMAN NEURODEGENERATIVE DISEASES

Figure S8: Horizontal genome tree of PqqU producers.

CHARACTERIZING THIOESTERASES FOR BIOCATALYTIC PEPTIDE MACROCYCLIZATION

Data associated with "Defining essential charged residues in fibril formation of a lysosomal derived N-terminal alpha-synuclein truncation

Conformational transition of KRAS^G12Cfrom being bound to sotorasib to divarasib.