thomas clarke

Publications

• Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth
• Effects of soluble flavin on heterogeneous electron transfer between surface-exposed bacterial cytochromes and iron oxides
• Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer
• Resolution of Key Roles for the Distal Pocket Histidine in Cytochrome c Nitrite Reductases
• A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA
• The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates
• ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR
• Characterization of the active site and calcium binding in cytochrome c nitrite reductases
• Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA from Escherichia coil
• A Crystal Structure of the Bifunctional Antibiotic Simocyclinone D8, Bound to DNA Gyrase
• Photocatalytic Removal of the Greenhouse Gas Nitrous Oxide by Liposomal Microreactors
• Uncovering nature’s electronics
• Plugging into bacterial nanowires: a comparison of model electrogenic organisms
• An electrogenic redox loop in sulfate reduction reveals a likely widespread mechanism of energy conservation
• Electron shuttle-mediated microbial Fe(III) reduction under alkaline conditions
• Electron transfer process in microbial electrochemical technologies: The role of cell-surface exposed conductive proteins
• Comparative structure-potentio-spectroscopy of the Shewanella outer membrane multiheme cytochromes
• Extracellular reduction of solid electron acceptors by Shewanella oneidensis
• Membrane-spanning electron transfer proteins from electrogenic bacteria: Production and investigation
• Photosensitised Multiheme Cytochromes as Light-Driven Molecular Wires and Resistors
• Whole-cell circular dichroism difference spectroscopy reveals an in vivo-specific deca-heme conformation in bacterial surface cytochromes
• Light-Driven H-2 Evolution and C=C or C=O Bond Hydrogenation by Shewanella oneidensis: A Versatile Strategy for Photocatalysis by Nonphotosynthetic Microorganisms
• Photoreduction of Shewanella oneidensis Extracellular Cytochromes by Organic Chromophores and Dye-Sensitized TiO2
• The metabolic impact of extracellular nitrite on aerobic metabolism of Paracoccus denitrificans
• Role of multiheme cytochromes involved in extracellular anaerobic respiration in bacteria
• The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire
• Photocatalytic Removal of the Greenhouse Gas Nitrous Oxide by Liposomal Microreactors
• Structural modeling of an outer membrane electron conduit from a metal-reducing bacterium suggests electron transfer via periplasmic redox partners
• Nanosecond heme-to-heme electron transfer rates in a multiheme cytochrome nanowire reported by a spectrally unique His/Met-ligated heme
• Analysis of structural MtrC models based on homology with the crystal structure of MtrF
• Structure of a bacterial cell surface decaheme electron conduit
• Molecular underpinnings of Fe(III) oxide reduction by Shewanella oneidensis MR-1
• Identification of furfural resistant strains of Saccharomyces cerevisiae and Saccharomyces paradoxus from a collection of environmental and industrial isolates
• Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF
• Freely diffusing versus adsorbed protein: Which better mimics the cellular state of a redox protein?
• Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals
• The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface
• Controlling electron transfer at the microbe-mineral interface
• Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration
• Development of a proteoliposome model to probe transmembrane electron-transfer reactions
• Quaternary structure changes in a second Per-Arnt-Sim domain mediate intramolecular redox signal relay in the NifL regulatory protein
• The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways
• The porin-cytochrome' model for microbe-to-mineral electron transfer
• Electron transfer and half-reactivity in nitrogenase
• Molecular interactions between multihaem cytochromes: probing the protein-protein interactions between pentahaem cytochromes of a nitrite reductase complex
• Structures of Phytophthora RXLR Effector Proteins A CONSERVED BUT ADAPTABLE FOLD UNDERPINS FUNCTIONAL DIVERSITY
• Substitutions in the redox-sensing PAS domain of the NifL regulatory protein define an inter-subunit pathway for redox signal transmission
• Characterization of a trans-outermembrane icosaheme complex for electron exchange between bacteria and their environment
• Making Connections: An Amphiphilic Ferrocene Stimulates Bacterial Electricity Production
• Mechanisms of Bacterial Extracellular Electron Exchange
• The Transcriptional Repressor Protein NsrR Senses Nitric Oxide Directly via a 2Fe-2S Cluster
• A dedicated haem lyase is required for the maturation of a novel bacterial cytochrome c with unconventional covalent haem binding
• Comparison of the structural and kinetic properties of the cytochrome c nitrite reductases from Escherichia coli, Wolinella succinogenes, Sulfurospirillum deleyianum and Desulfolvibrio desulfuricans
• Signal peptide-chaperone interactions on the twin-arginine protein transport pathway
• Purification and spectropotentiometric characterization of Escherichia coli NrfB, a decaheme homodimer that transfers electrons to the decaheme periplasmic nitrite reductase complex
• The metabolism of clopidogrel is catalyzed by human cytochrome P450 3A and is inhibited by atorvastatin
• Formation of a tight 1 : 1 complex of Clostridium pasteurianum Fe protein-Azotobacter vinelandii MoFe protein: Evidence for long-range interactions between the Fe protein binding sites during catalytic hydrogen evolution
• Klebsiella pneumoniae nitrogenase: Formation and stability of putative beryllium fluoride-ADP transition state complexes
• Novel haem c binding in a bacterial cytochrome requires a dedicated maturation system
• Characterization of an electron conduit between bacteria and the extracellular environment
• Escherichia coli cytochrome c nitrite reductase NrfA
• Role of a conserved glutamine residue in tuning the catalytic activity of Escherichia coli cytochrome c nitrite reductase
• The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis
• Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1
• Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors
• Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli
• The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA
• The role of the length and sequence of the linker domain of cytochrome b(5) in stimulating cytochrome P4502B4 catalysis
• A Cysteine Pair Controls Flavin Reduction by Extracellular Cytochromes during Anoxic/Oxic Environmental Transitions
• Characterization of the inner membrane cytochrome ImcH from Geobacter reveals its importance for extracellular electron transfer and energy conservation