Rafael Ferreira da Silva

Publications

• Teaching Parallel and Distributed Computing Concepts in Simulation with WRENCH
• Bridging Concepts and Practice in eScience via Simulation-Driven Engineering
• Developing accurate and scalable simulators of production workflow management systems with WRENCH
• Characterizing, Modeling, and Accurately Simulating Power and Energy Consumption of I/O-intensive Scientific Workflows
• A Novel Metric to Evaluate In Situ Workflows
• The Pegasus Workflow Management System: Translational Computer Science in Practice
• Modeling the Performance of Scientific Workflow Executions on HPC Platforms with Burst Buffers
• End-to-end online performance data capture and analysis for scientific workflows
• A lightweight method for evaluating in situ workflow efficiency
• Teaching parallel and distributed computing concepts in simulation with WRENCH
• Using simple PID-inspired controllers for online resilient resource management of distributed scientific workflows
• The Evolution of the Pegasus Workflow Management Software
• Measuring the impact of burst buffers on data-intensive scientific workflows
• Accurately Simulating Energy Consumption of I/O-Intensive Scientific Workflows
• An intelligent interface for integrating climate, hydrology, agriculture, and socioeconomic models
• MCEM
• Empowering Agroecosystem Modeling with HTC Scientific Workflows: The Cycles Model Use Case
• Exploration of Workflow Management Systems Emerging Features from Users Perspectives
• Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers
• Custom Execution Environments with Containers in Pegasus-Enabled Scientific Workflows
• Software architectures to integrate workflow engines in science gateways
• A characterization of workflow management systems for extreme-scale applications
• Workflow Performance Profiles: Development and Analysis
• On the use of burst buffers for accelerating data-intensive scientific workflows
• Distributed workflows for modeling experimental data
• A Job Sizing Strategy for High-Throughput Scientific Workflows
• Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges
• Collaborative circuit designs using the CRAFT repository
• Boutiques: a flexible framework to integrate command-line applications in computing platforms
• WRENCH: A Framework for Simulating Workflow Management Systems
• Pegasus in the Cloud: Science Automation through Workflow Technologies
• Reproducibility of execution environments in computational science using Semantics and Clouds
• Consecutive Job Submission Behavior at Mira Supercomputer
• Toward an End-to-End Framework for Modeling, Monitoring and Anomaly Detection for Scientific Workflows
• Performance Analysis of an I/O-Intensive Workflow Executing on Google Cloud and Amazon Web Services
• Analyzing users in parallel computing: A user-oriented study
• Increasing waiting time satisfaction in parallel job scheduling via a flexible MILP approach
• Science automation in practice: Performance data farming in workflows
• Asterism: Pegasus and Dispel4py Hybrid Workflows for Data-Intensive Science
• Automating environmental computing applications with scientific workflows
• A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow Executions
• Dynamic and Fault-Tolerant Clustering for Scientific Workflows
• Self-Management of Operational Issues for Grid Computing
• Reproducibility of neuroimaging analyses across operating systems
• Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHC
• PANORAMA: An approach to performance modeling and diagnosis of extreme-scale workflows
• Understanding the scientific software ecosystem and its impact: Current and future measures
• Practical Resource Monitoring for Robust High Throughput Computing
• Online Task Resource Consumption Prediction for Scientific Workflows
• Understanding User Behavior: From HPC to HTC
• A Science-Gateway Workload Archive to Study Pilot Jobs, User Activity, Bag of Tasks, Task Sub-steps, and Workflow Executions
• On-Line, Non-clairvoyant Optimization of Workflow Activity Granularity on Grids
• Self-healing of workflow activity incidents on distributed computing infrastructures
• Monte Carlo simulation on heterogeneous distributed systems: A computing framework with parallel merging and checkpointing strategies
• Controlling fairness and task granularity in distributed, online, non-clairvoyant workflow executions
• Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow Executions
• Pegasus, a Workflow Management System for Science Automation
• Community Resources for Enabling and Evaluating Research on Scientific Workflows
• A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study
• Balanced Task Clustering in Scientific Workflows
• Self-Healing of Operational Workflow Incidents on Distributed Computing Infrastructures
• Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP)
• A Virtual Imaging Platform for Multi-Modality Medical Image Simulation
• Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI
• Using a Simple Prioritisation Mechanism to Effectively Interoperate Service and Opportunistic Grids in the EELA-2 e-Infrastructure
• Toward fine-grained online task characteristics estimation in scientific workflows
• GLUME: A Strategy for Reducing Workflow Execution Times on Batch-Scheduled Platforms
• WfCommons: A framework for enabling scientific workflow research and development
• Evaluating Energy-Aware Scheduling Algorithms for I/O-Intensive Scientific Workflows
• Blueprint: Cyberinfrastructure Center of Excellence
• Modeling the Linux page cache for accurate simulation of data-intensive applications
• Assessing Resource Provisioning and Allocation of Ensembles of In Situ Workflows
• Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development
• Workflows Community Summit: Bringing the Scientific Workflows Community Together
• Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making
• Emerging Frameworks for Advancing Scientific Workflows Research, Development, and Education
• Toward more rigorous and informative nutritional epidemiology: The rational space between dismissal and defense of the status quo
• Serverless Containers – Rising Viable Approach to Scientific Workflows
• Peachy Parallel Assignments (EduHPC 2021)
• WfChef: Automated Generation of Accurate Scientific Workflow Generators
• A Community Roadmap for Scientific Workflows Research and Development
• A Roadmap to Robust Science for High-throughput Applications: The Scientists’ Perspective
• A Roadmap to Robust Science for High-throughput Applications: The Developers’ Perspective
• Lightning Talks of EduHPC 2020
• Workflows Community Summit: Tightening the Integration between Computing Facilities and Scientific Workflows
• Performance assessment of ensembles of in situ workflows under resource constraints
• Unveiling User Behavior on Summit Login Nodes as a User
• On the Feasibility of Simulation-Driven Portfolio Scheduling for Cyberinfrastructure Runtime Systems
• Automated generation of scientific workflow generators with WfChef
• Science Gateways: Accelerating Research and Education—Part I
• Science Gateways: Accelerating Research and Education—Part II
• Workflows Community Summit 2022: A Roadmap Revolution