Torbjørn Rognes

Professor (Bioinformatics)

Oslo, Norway


  • Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities DOI: 10.1371/journal.pgen.1003260
  • Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA) DOI: 10.1371/journal.pone.0034838
  • Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes DOI: 10.1093/nar/gks839
  • Schizosaccharomyces pombe encodes a mutated AP endonuclease 1 DOI: 10.1016/j.dnarep.2010.11.014
  • Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides DOI: 10.1371/journal.pone.0015356
  • Continuous and Periodic Expansion of CAG Repeats in Huntington's Disease R6/1 Mice DOI: 10.1371/journal.pgen.1001242
  • Mice Lacking Alkbh1 Display Sex-Ratio Distortion and Unilateral Eye Defects DOI: 10.1371/journal.pone.0013827
  • A Two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways
  • Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays DOI: 10.1371/journal.pone.0005943
  • Base excision repair: The long and short of it DOI: 10.1007/s00018-009-8736-z
  • Genome dynamics in major bacterial pathogens DOI: 10.1111/j.1574-6976.2009.00173.x
  • Large-scale inference of the point mutational spectrum in human segmental duplications DOI: 10.1186/1471-2164-10-43
  • The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts DOI: 10.1093/nar/gkp590
  • Characterization of novel mutations in the catalytic domain of the PCSK9 gene DOI: 10.1111/j.1365-2796.2007.01915.x
  • Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes DOI: 10.1016/j.neuroscience.2006.09.004
  • RNAmmer: Consistent and rapid annotation of ribosomal RNA genes DOI: 10.1093/nar/gkm160
  • Slip slidin' away: A duodecennial review of targeted genes in mismatch repair deficient colorectal cancer
  • Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats DOI: 10.1093/nar/gkm039
  • Computational prediction of microRNAs encoded in viral and other genomes DOI: 10.1155/JBB/2006/95270
  • PARALIGN: Rapid and sensitive sequence similarity searches powered by parallel computing technology DOI: 10.1093/nar/gki423
  • Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming DOI: 10.1093/nar/gki644
  • Biased distribution of DNA uptake sequences towards genome maintenance genes DOI: 10.1093/nar/gkh255
  • Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V DOI: 10.1093/nar/gkg472
  • Human DNA glycosylases of the bacterial Fpg/MutM superfamily: An alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA
  • Base removers and strand scissors: Different strategies employed in base excision and strand incision at modified base residues in DNA
  • Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA DOI: 10.1016/S0921-8777(00)00015-X
  • Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors
  • The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative DNA damage in yeast
  • SALSA: Improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments DOI: 10.1093/bioinformatics/14.10.839
  • Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites DOI: 10.1093/emboj/16.20.6314
  • A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD DOI: 10.1111/j.1365-2958.2006.05044.x
  • A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis DOI: 10.1186/1476-4598-8-5
  • ALKBH1 is a Histone H2A Dioxygenase Involved in Neural Differentiation DOI: 10.1002/stem.1228
  • DNA repair by bacterial AlkB proteins DOI: 10.1016/S0923-2508(03)00150-5
  • Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation DOI: 10.1186/1471-2105-12-221
  • OGG1: From Structural Analysis to the Knockout Mouse DOI: 10.1007/978-0-387-72974-9_5
  • The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage DOI: 10.1016/j.dnarep.2011.03.007

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