SM
Shannon McWeeney
Professor and Division Head (Bioinformatics and computational biology not elsewhere classified)
Portland, Oregon
Publications
- ERBB2/HER2 mutations are transforming and therapeutically targetable in leukemia
- Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms
- Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Figure from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Figure from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Graph Structured Neural Networks for Perturbation Biology
- Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Targeted RNA editing in brainstem alleviates respiratory dysfunction in a mouse model of Rett syndrome
- Data from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Comparison and validation of the 2022 European LeukemiaNet guidelines in acute myeloid leukemia
- Integrated analysis of patient samples identifies biomarkers for venetoclax efficacy and combination strategies in acute myeloid leukemia
- Data Integration and Reproducibility for High-Throughput Transcriptomics
- Multi-omic network signatures of disease
- CHALLENGES IN SECONDARY ANALYSIS OF HIGH THROUGHPUT SCREENING DATA
- Systems immunogenetics of vaccines
- Influenza Vaccination of Pregnant Women: Attitudes and Behaviors of Oregon Physician Prenatal Care Providers
- A systems framework for vaccine design
- Functional and genomic context in pathway analysis of GWAS data
- Cytomegalovirus miRNAs Target Secretory Pathway Genes to Facilitate Formation of the Virion Assembly Compartment and Reduce Cytokine Secretion
- Selection for Drinking in the Dark Alters Brain Gene Coexpression Networks
- Protein co-expression network analysis (ProCoNA)
- The genetics of gene expression in complex mouse crosses as a tool to study the molecular underpinnings of behavior traits
- Genetic factors involved in risk for methamphetamine intake and sensitization
- Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library
- Androgen Receptor Promotes Ligand-Independent Prostate Cancer Progression through c-Myc Upregulation
- Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine
- Limited Clinical Utility of a Genetic Risk Score for the Prediction of Fracture Risk in Elderly Subjects
- Oncogenic CSF3R Mutations in Chronic Neutrophilic Leukemia and Atypical CML
- Copy Number Variation Analysis in 98 Individuals with PHACE Syndrome
- Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross
- Corrigendum: The BioPAX community standard for pathway data sharing
- Utilizing RNA-Seq data for de novo coexpression network inference
- Gene networks and haloperidol-induced catalepsy
- Genes, behavior and next-generation RNA sequencing
- HitWalker: variant prioritization for personalized functional cancer genomics
- Identification of Cellular Interactions in the Tumor Immune Microenvironment Underlying CD8 T Cell Exhaustion
- Discovery and characterization of targetable NTRK point mutations in hematologic neoplasms
- REST corepressors RCOR1 and RCOR2 and the repressor INSM1 regulate the proliferation–differentiation balance in the developing brain
- Recurrent cyclin D2 mutations in myeloid neoplasms
- Teaching data science fundamentals through realistic synthetic clinical cardiovascular data
- LSD1 activates a lethal prostate cancer gene network independently of its demethylase function
- Synthetic lethality of TNK2 inhibition in PTPN11-mutant leukemia
- Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection in Collaborative Cross mice
- Data from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
- Just how transformative will AI/ML be for immuno-oncology?
- Microcephaly Genes and Risk of Late-onset Alzheimer Disease
- Mapping cellular transcriptosomes in autopsied Alzheimer's disease subjects and relevant animal models
- Protein Database and Quantitative Analysis Considerations when Integrating Genetics and Proteomics to Compare Mouse Strains
- Translational gene mapping of cognitive decline
- Consensus Framework for Exploring Microarray Data Using Multiple Clustering Methods
- Convergence of Divergent Tumors: A Systems Biology Approach of Tumor-specific Signaling
- Localization of TFIIB binding regions using serial analysis of chromatin occupancy
- Occupancy Classification of Position Weight Matrix-Inferred Transcription Factor Binding Sites
- On the Integration of Alcohol-Related Quantitative Trait Loci and Gene Expression Analyses
- A DNA methylation microarray-based study identifies ERG as a gene commonly methylated in prostate cancer
- Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse
- Similar gene expression profiles do not imply similar tissue functions
- SNPs matter: impact on detection of differential expression
- Brain size genes and risk of dementia
- A Simulation Framework to Investigate in vitro Viral Infection Dynamics
- A simulation framework to investigate in vitro viral infection dynamics
- Detection of Expression Quantitative Trait Loci in Complex Mouse Crosses: Impact and Alleviation of Data Quality and Complex Population Substructure
- Differential Network Analysis Reveals Genetic Effects on Catalepsy Modules
- Genetics, Behavior, and Brain Dopamine Systems
- High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs
- A Viral microRNA Down-Regulates Multiple Cell Cycle Genes through mRNA 5′UTRs
- Evidence for linkage and association to alcohol dependence on chromosome 19
- Computational Detection of Alternative Exon Usage
- Complex Genetics of Interactions of Alcohol and CNS Function and Behavior
- Distribution of Menin-Occupied Regions in Chromatin Specifies a Broad Role of Menin in Transcriptional Regulation
- The Plasmodium genome database
- Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems
- Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
- Deoxyribonucleic Acid Microarray Analysis of Gene Expression Pattern in the Arcuate Nucleus/Ventromedial Nucleus of Hypothalamus during Lactation
- P1-227 Gene expression profiles of transcripts in amyloid precursor protein transgenic mice Up-regulation of mitochondrial metabolism and apoptotic genes is an early cellular change in Alzheimer's disease
- Defining the CREB RegulonA Genome-Wide Analysis of Transcription Factor Regulatory Regions
- DNA Microarray and Proteomic Strategies for Understanding Alcohol Action
- Renal Gene and Protein Expression Signatures for Prediction of Kidney Disease Progression
- MIFlowCyt: The minimum information about a flow cytometry experiment
- Codon usage bias and base composition in MHC genes in humans and common chimpanzees
- TandTRAQ: an open-source tool for integrated protein identification and quantitation
- The BioPAX community standard for pathway data sharing
- The BioPAX community standard for pathway data sharing
- Locus and population specific evolution in HLA class II genes
- Defining the CREB RegulonA Genome-Wide Analysis of Transcription Factor Regulatory Regions
- Identification of -catenin binding regions in colon cancer cells using ChIP-Seq
- An Antisense Transcript Induced by Wnt/beta-Catenin Signaling Decreases E2F4