Shannon McWeeney

Publications

• ERBB2/HER2 mutations are transforming and therapeutically targetable in leukemia
• Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms
• Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Figure from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Figure from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Supplementary Table from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Graph Structured Neural Networks for Perturbation Biology
• Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Targeted RNA editing in brainstem alleviates respiratory dysfunction in a mouse model of Rett syndrome
• Data from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Comparison and validation of the 2022 European LeukemiaNet guidelines in acute myeloid leukemia
• Integrated analysis of patient samples identifies biomarkers for venetoclax efficacy and combination strategies in acute myeloid leukemia
• Data Integration and Reproducibility for High-Throughput Transcriptomics
• Multi-omic network signatures of disease
• CHALLENGES IN SECONDARY ANALYSIS OF HIGH THROUGHPUT SCREENING DATA
• Systems immunogenetics of vaccines
• Influenza Vaccination of Pregnant Women: Attitudes and Behaviors of Oregon Physician Prenatal Care Providers
• A systems framework for vaccine design
• Functional and genomic context in pathway analysis of GWAS data
• Cytomegalovirus miRNAs Target Secretory Pathway Genes to Facilitate Formation of the Virion Assembly Compartment and Reduce Cytokine Secretion
• Selection for Drinking in the Dark Alters Brain Gene Coexpression Networks
• Protein co-expression network analysis (ProCoNA)
• The genetics of gene expression in complex mouse crosses as a tool to study the molecular underpinnings of behavior traits
• Genetic factors involved in risk for methamphetamine intake and sensitization
• Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library
• Androgen Receptor Promotes Ligand-Independent Prostate Cancer Progression through c-Myc Upregulation
• Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine
• Limited Clinical Utility of a Genetic Risk Score for the Prediction of Fracture Risk in Elderly Subjects
• Oncogenic CSF3R Mutations in Chronic Neutrophilic Leukemia and Atypical CML
• Copy Number Variation Analysis in 98 Individuals with PHACE Syndrome
• Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross
• Corrigendum: The BioPAX community standard for pathway data sharing
• Utilizing RNA-Seq data for de novo coexpression network inference
• Gene networks and haloperidol-induced catalepsy
• Genes, behavior and next-generation RNA sequencing
• HitWalker: variant prioritization for personalized functional cancer genomics
• Identification of Cellular Interactions in the Tumor Immune Microenvironment Underlying CD8 T Cell Exhaustion
• Discovery and characterization of targetable NTRK point mutations in hematologic neoplasms
• REST corepressors RCOR1 and RCOR2 and the repressor INSM1 regulate the proliferation–differentiation balance in the developing brain
• Recurrent cyclin D2 mutations in myeloid neoplasms
• Teaching data science fundamentals through realistic synthetic clinical cardiovascular data
• LSD1 activates a lethal prostate cancer gene network independently of its demethylase function
• Synthetic lethality of TNK2 inhibition in PTPN11-mutant leukemia
• Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection in Collaborative Cross mice
• Data from Luxeptinib (CG-806) Targets FLT3 and Clusters of Kinases Operative in Acute Myeloid Leukemia
• Just how transformative will AI/ML be for immuno-oncology?
• Microcephaly Genes and Risk of Late-onset Alzheimer Disease
• Mapping cellular transcriptosomes in autopsied Alzheimer's disease subjects and relevant animal models
• Protein Database and Quantitative Analysis Considerations when Integrating Genetics and Proteomics to Compare Mouse Strains
• Translational gene mapping of cognitive decline
• Consensus Framework for Exploring Microarray Data Using Multiple Clustering Methods
• Convergence of Divergent Tumors: A Systems Biology Approach of Tumor-specific Signaling
• Localization of TFIIB binding regions using serial analysis of chromatin occupancy
• Occupancy Classification of Position Weight Matrix-Inferred Transcription Factor Binding Sites
• On the Integration of Alcohol-Related Quantitative Trait Loci and Gene Expression Analyses
• A DNA methylation microarray-based study identifies ERG as a gene commonly methylated in prostate cancer
• Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse
• Similar gene expression profiles do not imply similar tissue functions
• SNPs matter: impact on detection of differential expression
• Brain size genes and risk of dementia
• A Simulation Framework to Investigate in vitro Viral Infection Dynamics
• A simulation framework to investigate in vitro viral infection dynamics
• Detection of Expression Quantitative Trait Loci in Complex Mouse Crosses: Impact and Alleviation of Data Quality and Complex Population Substructure
• Differential Network Analysis Reveals Genetic Effects on Catalepsy Modules
• Genetics, Behavior, and Brain Dopamine Systems
• High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs
• A Viral microRNA Down-Regulates Multiple Cell Cycle Genes through mRNA 5′UTRs
• Evidence for linkage and association to alcohol dependence on chromosome 19
• Computational Detection of Alternative Exon Usage
• Complex Genetics of Interactions of Alcohol and CNS Function and Behavior
• Distribution of Menin-Occupied Regions in Chromatin Specifies a Broad Role of Menin in Transcriptional Regulation
• The Plasmodium genome database
• Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems
• Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
• Deoxyribonucleic Acid Microarray Analysis of Gene Expression Pattern in the Arcuate Nucleus/Ventromedial Nucleus of Hypothalamus during Lactation
• P1-227 Gene expression profiles of transcripts in amyloid precursor protein transgenic mice Up-regulation of mitochondrial metabolism and apoptotic genes is an early cellular change in Alzheimer's disease
• Defining the CREB RegulonA Genome-Wide Analysis of Transcription Factor Regulatory Regions
• DNA Microarray and Proteomic Strategies for Understanding Alcohol Action
• Renal Gene and Protein Expression Signatures for Prediction of Kidney Disease Progression
• MIFlowCyt: The minimum information about a flow cytometry experiment
• Codon usage bias and base composition in MHC genes in humans and common chimpanzees
• TandTRAQ: an open-source tool for integrated protein identification and quantitation
• The BioPAX community standard for pathway data sharing
• The BioPAX community standard for pathway data sharing
• Locus and population specific evolution in HLA class II genes
• Defining the CREB RegulonA Genome-Wide Analysis of Transcription Factor Regulatory Regions
• Identification of  -catenin binding regions in colon cancer cells using ChIP-Seq
• An Antisense Transcript Induced by Wnt/beta-Catenin Signaling Decreases E2F4