Sarah Forrester

Publications

• Cloud-SPAN/03genomics: Cloud-SPAN Genomics Session 3: Assessing Read Quality then Trimming and Filtering Reads
• Cloud-SPAN/04genomics: Cloud-SPAN Genomics Session 4: Finding Sequence Variants
• The revolution of whole genome sequencing to study parasites
• Whole-genome sequencing of Trypanosoma brucei reveals introgression between subspecies that is associated with virulence
• The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host-switching
• A third generation vaccine for human visceral leishmaniasis and post kala azar dermal leishmaniasis: First-in-human trial of ChAd63-KH
• Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis
• Chromosomal assembly of the nuclear genome of the endosymbiont-bearing trypanosomatid Angomonas deanei.
• A Leishmania infantum genetic marker associated with miltefosine treatment failure for visceral leishmaniasis
• Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis
• Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis
• Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis
• Bioinformatics could unlock greater biogas production
• The mRNA-bound Proteome of Leishmania mexicana: Novel Genetic Insight into an Ancient Parasite
• Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year [version 2; peer review: 1 approved, 1 approved with reservations]
• Hold the best meeting you ever attended
• Multiple targets of balancing selection in Leishmania donovani complex parasites
• Tissue specific dual RNA-seq defines host-parasite interplay in murine visceral leishmaniasis caused by Leishmania donovani and Leishmania infantum
• Leishmania infantum Genotype is a Major Factor in Visceral Leishmaniasis Mortality in Brazil
• Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year
• Tissue Specific Dual RNA-Seq Defines Host–Parasite Interplay in Murine Visceral Leishmaniasis Caused by Leishmania donovani and Leishmania infantum
• Cloud-SPAN/genomics01-intro:
• Cloud-SPAN/genomics02-proj-mngt-cloud-genomics:
• Tissue-specific transcriptomic changes associated with AmBisome® treatment of BALB/c mice with experimental visceral leishmaniasis [version 1; peer review: 3 approved]
• Experimental Selection of Paromomycin Resistance in Leishmania donovani Amastigotes Induces Variable Genomic Polymorphisms
• 3′Nucleotidase/nuclease is required for Leishmania infantum clinical isolate susceptibility to miltefosine
• Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year [version 3; peer review: 2 approved]
• The Role of Biomethane in Reaching Net Carbon Zero
• Co-infection of Leishmania infantum and a Crithidia-related species in a case of refractory relapsed visceral leishmaniasis with non-ulcerated cutaneous manifestation in Brazil
• Cloud-SPAN Prenomics: Overview
• Cloud-SPAN Prenomics Session 1. Understanding your file systems + the shell
• Cloud-SPAN Prenomics Session 2. Using the command line
• Cloud-SPAN/00genomics: Cloud-SPAN Genomics Course Overview
• Cloud-SPAN/01genomics: Cloud-SPAN Genomics Session 1: Project Management for Cloud Genomics
• Cloud-SPAN/02genomics: Cloud-SPAN Genomics Session 2: Data Preparation and Organisation
• Cloud-SPAN Metagenomics Course Session 1: QC & Assembly
• Cloud-SPAN Metagenomics Course: Overview
• Cloud-SPAN Metagenomics Course Session 2: Polishing
• Cloud-SPAN Metagenomics Course Session 3: Taxonomic Annotation
• Cloud-SPAN Metagenomics Course Session 4: Binning + Functional Annotation
• Cloud-SPAN Cloud Admin Guide: Overview
• Cloud-SPAN Cloud Admin Guide: Setting Work Environments
• Cloud-SPAN Cloud Admin Guide: Managing AWS Instances
• Implementation of anaerobic digestion for valorizing the organic fraction of municipal solid waste in developing countries: Technical insights from a systematic review
• Cloud-SPAN NERC Metagenomics Course: Overview
• Cloud-SPAN NERC Metagenomics: Files & Directories
• Cloud-SPAN NERC Metagenomics: Files & Directories
• Cloud-SPAN NERC Metagenomics Course: Overview
• Cloud-SPAN NERC Metagenomics Course Lesson 2: Using the Command Line
• Cloud-SPAN NERC Metagenomics Course Lesson 2: Using the Command Line
• Cloud-SPAN NERC Metagenomics Course Lesson 3: QC & Assembly
• Cloud-SPAN NERC Metagenomics Course Lesson 3: QC & Assembly
• Cloud-SPAN NERC Metagenomics Course Lesson 4: Polishing
• Cloud-SPAN NERC Metagenomics Course Lesson 4: Polishing
• Cloud-SPAN NERC Metagenomics Course Session 5: Binning & Functional Annotation
• Cloud-SPAN NERC Metagenomics Course Session 5: Binning & Functional Annotation
• Cloud-SPAN NERC Metagenomics Course Lesson 6: Taxonomic Annotation
• Cloud-SPAN NERC Metagenomics Course Lesson 6: Taxonomic Annotation
• Multiple targets of balancing selection inLeishmania donovanicomplex parasites