Noah Fahlgren

Publications

• Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection DOI: 10.1371/journal.ppat.1004755
• Lights, camera, action: high-throughput plant phenotyping is ready for a close-up DOI: 10.1016/j.pbi.2015.02.006
• Highly specific gene silencing in a monocot species by artificial microRNAs derived from chimeric miRNA precursors DOI: 10.1111/tpj.12835
• Preparation of multiplexed small RNA libraries from plants
• New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis ISSN: 0032-0889, 1532-2548
• Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs DOI: 10.1371/journal.pone.0077181
• Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon DOI: 10.1186/gb-2013-14-12-r145
• The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification DOI: 10.1016/j.cub.2012.04.011
• Functional analysis of three Arabidopsis argonautes using slicer-defective mutants DOI: 10.1105/tpc.112.099945
• The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications DOI: 10.1371/journal.pgen.1002369
• The Arabidopsis lyrata genome sequence and the basis of rapid genome size change DOI: 10.1038/ng.807
• mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans DOI: 10.1073/pnas.1018695108
• Evolution and functional diversification of MIRNA genes DOI: 10.1105/tpc.110.082784
• Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis DOI: 10.1038/nsmb.1866
• miRNA Target Prediction in Plants.
• Microrna gene evolution in Arabidopsis lyrata and Arabidopsis thaliana DOI: 10.1105/tpc.110.073999
• Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing DOI: 10.1073/pnas.0913203107
• Genome sequencing and analysis of the model grass Brachypodium distachyon DOI: 10.1038/nature08747
• Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection DOI: 10.1105/tpc.109.073056
• Genome-wide profiling of Populus small RNAs DOI: 10.1186/1471-2164-10-620
• Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans DOI: 10.1038/nature08358
• Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline DOI: 10.1016/j.molcel.2009.09.020
• Computational and analytical framework for small RNA profiling by high-throughput sequencing DOI: 10.1261/rna.1473809
• Update of ASRP: The Arabidopsis Small RNA Project database DOI: 10.1093/nar/gkm997
• Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation DOI: 10.1016/j.cell.2008.02.033
• PRG-1 and 21U-RNAs Interact to Form the piRNA Complex Required for Fertility in C. elegans DOI: 10.1016/j.molcel.2008.06.002
• AGO1-miR173 complex initiates phased siRNA formation in plants DOI: 10.1073/pnas.0810241105
• Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages DOI: 10.1111/j.1365-313X.2007.03218.x
• High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes DOI: 10.1371/journal.pone.0000219
• Genome-wide profiling and analysis of Arabidopsis siRNAs. DOI: 10.1371/journal.pbio.0050057
• Genome-wide profiling and analysis of Arabidopsis siRNAs DOI: 10.1371/journal.pbio.0050057
• Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting DOI: 10.1105/tpc.107.050062
• Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA Affects Developmental Timing and Patterning in Arabidopsis DOI: 10.1016/j.cub.2006.03.065
• Expression of Arabidopsis MIRNA genes DOI: 10.1104/pp.105.062943