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Merve Dede

Publications

  • Anthracosis: An unusual cause of vocal fold paralysis.
  • RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data.
  • Hierarchical organization of the human cell from a cancer coessentiality network
  • RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data
  • A network of human functional gene interactions from knockout fitness screens in cancer cells
  • Biases and Blind-Spots in Genome-Wide CRISPR Knockout Screens
  • Multiplex enCas12a screens show functional buffering by paralogs is systematically absent from genome-wide CRISPR/Cas9 knockout screens
  • Multiplex enCas12a screens detect functional buffering among paralogs otherwise masked in monogenic Cas9 knockout screens.
  • Discovery of novel tumor suppressors from CRISPR screens reveals lipid-sensitive subtype of AML
  • Recovering false negatives in CRISPR fitness screens with JLOE
  • Genome-wide CRISPR screens using isogenic cells reveal vulnerabilities conferred by loss of tumor suppressors
  • Systematic Analysis of Actively Transcribed Core Matrisome Genes Across Tissues and Cell Phenotypes
  • Discovery of putative tumor suppressors from CRISPR screens reveals rewired lipid metabolism in acute myeloid leukemia cells
  • Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux
  • Characterizing metabolism from bulk and single-cell RNA-seq data using METAFlux
  • Anthracosis: An unusual cause of vocal fold paralysis
  • Safety, efficacy and determinants of response of allogeneic CD19-specific CAR-NK cells in CD19+ B cell tumors: a phase 1/2 trial
  • Forecasting acute kidney injury and resource utilization in ICU patients using longitudinal, multimodal models

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