Keith Bradnam

Associate Project Scientist
Davis, CA
I am an Associate Project Scientist in the laboratory of Ian Korf at the UC Davis Genome Center. I first started my career in bioinformatics back in 1993 as a Masters student at the University of Manchester. I can also be found talking about various issues relating to genomics and bioinformatics through my own twitter account (@kbradnam), the Assemblathon twitter account (@assemblathon), and on my ACGT blog (http://acgt.me).

Publications

  • Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. DOI: 10.1186/gb-2013-14-1-r10
  • Assemblathon 2 assemblies DOI: 10.5524/100060
  • Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. DOI: 10.1186/2047-217X-2-10
  • Assembled Fosmid sequences used for assessment of Assemblathon 2 entries DOI: 10.5524/100062
  • CEGMA gene predictions for Assemblathon 2 entries DOI: 10.5524/100061
  • Assemblathon 1: a competitive assessment of de novo short read assembly methods. DOI: 10.1101/gr.126599.111
  • Evidence for a DNA-Based Mechanism of Intron-Mediated Enhancement DOI: 10.3389/fpls.2011.00098
  • Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells DOI: 10.1186/1756-8935-4-20
  • Assessing the gene space in draft genomes ISSN: 0305-1048
  • Longer First Introns Are a General Property of Eukaryotic Gene Structure DOI: 10.1371/journal.pone.0003093
  • CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes ISSN: 0076-6941
  • WormBase: a comprehensive data resource for Caenorhabditis biology and genomics
  • WormBase as an integrated platform for the C-elegans ORFeome
  • WormBase: a multi-species resource for nematode biology and genomics
  • WormBase: a cross-species database for comparative genomics
  • Website Update: The UK Crop Plant Bioinformatics Network (UK CropNet). http://ukcrop.net DOI: 10.1002/1097-0061(200012)17:4<335::AID-YEA49>3.0.CO;2-7
  • G+C content variation along and among Saccharomyces cerevisiae chromosomes ISSN: 0737-4038