Jonathan Cooper

Research Fellow in Computational Science
University of Oxford, UK

Publications

  • Considerations for the use of cellular electrophysiology models within cardiac tissue simulations DOI: 10.1016/j.pbiomolbio.2011.06.002
  • High-throughput functional curation of cellular electrophysiology models DOI: 10.1016/j.pbiomolbio.2011.06.003
  • Minimum Information About a Simulation Experiment (MIASE) DOI: 10.1371/journal.pcbi.1001122
  • Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk DOI: 10.1093/cvr/cvr044
  • TumorML: Concept and Requirements of an In Silico Cancer Modelling Markup Language
  • A numerical guide to the solution of the bidomain equations of cardiac electrophysiology DOI: 10.1016/j.pbiomolbio.2010.05.006
  • A POSTERIORI ERROR ANALYSIS FOR THE USE OF LOOKUP TABLES IN CARDIAC ELECTROPHYSIOLOGY SIMULATIONS DOI: 10.1137/090773064
  • An overview of the CellML API and its implementation DOI: 10.1186/1471-2105-11-178
  • The Virtual Physiological Human TOOLKIT DOI: 10.1098/rsta.2010.0144
  • Toward a VPH/Physiome ToolKit DOI: 10.1002/wsbm.63
  • A computational study of discrete mechanical tissue models DOI: 10.1088/1478-3975/6/3/036001
  • An integrative computational model for intestinal tissue renewal DOI: 10.1111/j.1365-2184.2009.00627.x
  • Chaste: A test-driven approach to software development for biological modelling DOI: 10.1016/j.cpc.2009.07.019
  • CHASTE: incorporating a novel multi-scale spatial and temporal algorithm into a large-scale open source library DOI: 10.1098/rsta.2008.0309
  • A model-driven approach to automatic conversion of physical units DOI: 10.1002/spe.828
  • CellML and associated tools and techniques DOI: 10.1098/rsta.2008.0094
  • Chaste: using agile programming techniques to develop computational biology software DOI: 10.1098/rsta.2008.0096
  • Experience Report: A Haskell Interpreter for CellML
  • On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations DOI: citeulike-article-id:5372740
  • Experience report DOI: 10.1145/1291220.1291190
  • Functional Curation: Potential Future Directions for SED-ML DOI: 10.1038/npre.2011.6327