Hidemasa Bono

Publications

• Identification of Key Uric Acid Synthesis Pathway in a Unique Mutant Silkworm Bombyx mori Model of Parkinson’s Disease DOI: 10.1371/journal.pone.0069130
• GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts. DOI: 10.1093/nar/gks448
• Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV. DOI: 10.1093/bib/bbr039
• Gene expression profiling in multipotent DFAT cells derived from mature adipocytes. DOI: 10.1016/j.bbrc.2011.03.063
• Allie: a database and a search service of abbreviations and long forms. DOI: 10.1093/database/bar013
• Id4, a new candidate gene for senile osteoporosis, acts as a molecular switch promoting osteoblast differentiation. DOI: 10.1371/journal.pgen.1001019
• Gendoo: functional profiling of gene and disease features using MeSH vocabulary. DOI: 10.1093/nar/gkp483
• Identification of novel PPARgamma target genes by integrated analysis of ChIP-on-chip and microarray expression data during adipocyte differentiation. DOI: 10.1016/j.bbrc.2008.05.037
• BioCompass: a novel functional inference tool that utilizes MeSH hierarchy to analyze groups of genes. PMID: 18430990
• Identification of novel steroid target genes through the combination of bioinformatics and functional analysis of hormone response elements. DOI: 10.1016/j.bbrc.2005.10.188
• The study of metabolic pathways in tumors based on the transcriptome. DOI: 10.1016/j.semcancer.2005.04.008
• SayaMatcher: Genome scale organization and systematic analysis of nuclear receptor response elements ISSN: 0378-1119
• Identification and functional analysis of consensus androgen response elements in human prostate cancer cells. DOI: 10.1016/j.bbrc.2004.10.174
• Integrative annotation of 21,037 human genes validated by full-length cDNA clones. DOI: 10.1371/journal.pbio.0020162
• Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library. DOI: 10.1016/j.ygeno.2004.01.006
• Gene discovery in genetically labeled single dopaminergic neurons of the retina. DOI: 10.1073/pnas.0400913101
• MaXML: mouse annotation XML. PMID: 15089750
• Molecular basis of constitutive production of basement membrane components. Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells. DOI: 10.1074/jbc.M304985200
• Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice. DOI: 10.1093/carcin/bgg133