Elisha Wood-Charlson

Publications

  • Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium
  • Are we missing half of the viruses in the ocean?
  • Summer bridge program establishes nascent pipeline to expand and diversify hawai‘i’s undergraduate geoscience enrollment
  • Generating viral metagenomes from the coral holobiont
  • HoloVir: A workflow for investigating the diversity and function of viruses in invertebrate holobionts
  • Abundance and morphology of virus-like particles associated with the coral Acropora hyacinthus differ between healthy and white syndrome-infected states
  • Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise
  • Immunocytochemical evidence that symbiotic algae secrete potential recognition signal molecules in hospite
  • CRISPR-Cas defense system and potential prophages in cyanobacteria associated with the coral black band disease
  • The ASLO Storytellers Series Connecting with Our Keiki (Hawaiian for "Children")
  • A Shifting Tide: Recommendations for Incorporating Science Communication into Graduate Training
  • Implication of the host TGFβ pathway in the onset of symbiosis between larvae of the coral Fungia scutaria and the dinoflagellate Symbiodinium sp. (clade C1f)
  • Translating science into stories
  • The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics
  • Coral-associated viral communities show high levels of diversity and host auxiliary functions
  • Diel cycling and long-term persistence of viruses in the ocean's euphotic zone
  • Bioinformatic Teaching Resources – For Educators, by Educators – Using KBase, a Free, User-Friendly, Open Source Platform
  • The National Microbiome Data Collaborative: enabling microbiome science
  • ECOGEO Workshop: Binning Module - Anvi'o
  • Local BLAST database
  • Assembly Introduction
  • Concatenated Tree Construction Demo: Identify Marker Genes
  • Qiime Commands
  • ECOGEO 'Omics Training: 3.1 Amplicon Analysis - Mothur
  • ECOGEO 'Omics Training: 4.3 Binning Module - Anvi'o
  • Teaching the art and science of getting research funding
  • Quality Assessment: FastQC
  • Functional Annotation & Beyond with Integrated Microbial Genomes (IMG)
  • Mothur Amplicon Analysis
  • Unix and Bioinformatics
  • Unix and Bioinformatics
  • ECOGEO 'Omics Training: 1.0 Unix and Bioinformatics
  • ECOGEO 'Omics Training: 2.0 Quality Control
  • ECOGEO 'Omics Training: 4.1 Assembly
  • ECOGEO 'Omics Training: 4.2 Annotation
  • ECOGEO 'Omics Training: 4.4 Phylogenetics
  • ECOGEO 'Omics Training: 3.2 Amplicon Analysis - QIIME
  • ECOGEO 'Omics Training: Introduction to Environmenal 'Omics using a Unix-based Virtual Machine
  • Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data
  • Planet Microbe: Toward the integration of oceanographic ‘omics, environmental and physiochemical data layers
  • Marine Viruses
  • Marine Symbioses: Metazoans and Microbes
  • Reef invertebrate viromics: diversity, host specificity and functional capacity
  • Novel T4 bacteriophages associated with black band disease in corals
  • iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
  • A Genomic Catalogue of Earth’s Microbiomes - Introductory KBase Narrative
  • 2020 Multiscale Microbial Dynamics Modeling Course
  • Introduction to Metadata and Ontologies: Everything You Always Wanted to Know About Metadata and Ontologies (But Were Afraid to Ask)
  • A genomic catalog of Earth’s microbiomes
  • Make the Most Out of Genome Announcements with KBase
  • Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis
  • Temporal and spatial infection dynamics indicate recognition events in the early hours of a dinoflagellate/coral symbiosis
  • The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis
  • Ocean Sciences Perspectives on Integrated, Coordinated, Open, Networked (ICON) Science
  • Ten simple rules for getting and giving credit for data
  • Metagenome-assembled genome extraction and analysis from microbiomes using KBase

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