Elisha Wood-Charlson

Publications

• Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium
• Are we missing half of the viruses in the ocean?
• Summer bridge program establishes nascent pipeline to expand and diversify hawai‘i’s undergraduate geoscience enrollment
• Generating viral metagenomes from the coral holobiont
• HoloVir: A workflow for investigating the diversity and function of viruses in invertebrate holobionts
• Abundance and morphology of virus-like particles associated with the coral Acropora hyacinthus differ between healthy and white syndrome-infected states
• Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise
• Immunocytochemical evidence that symbiotic algae secrete potential recognition signal molecules in hospite
• CRISPR-Cas defense system and potential prophages in cyanobacteria associated with the coral black band disease
• The ASLO Storytellers Series Connecting with Our Keiki (Hawaiian for "Children")
• A Shifting Tide: Recommendations for Incorporating Science Communication into Graduate Training
• Implication of the host TGFβ pathway in the onset of symbiosis between larvae of the coral Fungia scutaria and the dinoflagellate Symbiodinium sp. (clade C1f)
• Translating science into stories
• The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics
• Coral-associated viral communities show high levels of diversity and host auxiliary functions
• Diel cycling and long-term persistence of viruses in the ocean's euphotic zone
• Bioinformatic Teaching Resources – For Educators, by Educators – Using KBase, a Free, User-Friendly, Open Source Platform
• The National Microbiome Data Collaborative: enabling microbiome science
• ECOGEO Workshop: Binning Module - Anvi'o
• Local BLAST database
• Assembly Introduction
• Concatenated Tree Construction Demo: Identify Marker Genes
• Qiime Commands
• ECOGEO 'Omics Training: 3.1 Amplicon Analysis - Mothur
• ECOGEO 'Omics Training: 4.3 Binning Module - Anvi'o
• Teaching the art and science of getting research funding
• Quality Assessment: FastQC
• Functional Annotation & Beyond with Integrated Microbial Genomes (IMG)
• Mothur Amplicon Analysis
• Unix and Bioinformatics
• Unix and Bioinformatics
• ECOGEO 'Omics Training: 1.0 Unix and Bioinformatics
• ECOGEO 'Omics Training: 2.0 Quality Control
• ECOGEO 'Omics Training: 4.1 Assembly
• ECOGEO 'Omics Training: 4.2 Annotation
• ECOGEO 'Omics Training: 4.4 Phylogenetics
• ECOGEO 'Omics Training: 3.2 Amplicon Analysis - QIIME
• ECOGEO 'Omics Training: Introduction to Environmenal 'Omics using a Unix-based Virtual Machine
• Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data
• Planet Microbe: Toward the integration of oceanographic ‘omics, environmental and physiochemical data layers
• Marine Viruses
• Marine Symbioses: Metazoans and Microbes
• Reef invertebrate viromics: diversity, host specificity and functional capacity
• Novel T4 bacteriophages associated with black band disease in corals
• iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
• A Genomic Catalogue of Earth’s Microbiomes - Introductory KBase Narrative
• 2020 Multiscale Microbial Dynamics Modeling Course
• Introduction to Metadata and Ontologies: Everything You Always Wanted to Know About Metadata and Ontologies (But Were Afraid to Ask)
• A genomic catalog of Earth’s microbiomes
• Make the Most Out of Genome Announcements with KBase
• Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis
• Temporal and spatial infection dynamics indicate recognition events in the early hours of a dinoflagellate/coral symbiosis
• The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis
• Ocean Sciences Perspectives on Integrated, Coordinated, Open, Networked (ICON) Science
• Ten simple rules for getting and giving credit for data
• Metagenome-assembled genome extraction and analysis from microbiomes using KBase
• Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase
• The Importance of Sharing Data in Systems Biology
• KBase Educators: Microbiome Workforce Development Program
• Protein Knowledge Integration Center (ProKiC)
• A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)
• Data Transfer Service
• Microbiomes In Computational Research Opportunities Network (MICROnet)
• ECOGEO Workshop: Binning Module - Anvi'o
• ECOGEO 'Omics Training: 3.1 Amplicon Analysis - Mothur
• ECOGEO 'Omics Training: 1.0 Unix and Bioinformatics
• ECOGEO 'Omics Training: 4.3 Binning Module - Anvi'o
• ECOGEO 'Omics Training: 2.0 Quality Control
• ECOGEO 'Omics Training: 4.1 Assembly
• ECOGEO 'Omics Training: 4.2 Annotation
• ECOGEO 'Omics Training: 4.4 Phylogenetics
• ECOGEO 'Omics Training: 3.2 Amplicon Analysis - QIIME
• ECOGEO 'Omics Training: Introduction to Environmenal 'Omics using a Unix-based Virtual Machine
• A Scientific Author Guide for Publishing Open Research Using Physical Samples
• A Scientific Author Guide for Publishing Open Research Using Physical Samples