EW
Publications
- Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium
- Are we missing half of the viruses in the ocean?
- Summer bridge program establishes nascent pipeline to expand and diversify hawai‘i’s undergraduate geoscience enrollment
- Generating viral metagenomes from the coral holobiont
- HoloVir: A workflow for investigating the diversity and function of viruses in invertebrate holobionts
- Abundance and morphology of virus-like particles associated with the coral Acropora hyacinthus differ between healthy and white syndrome-infected states
- Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise
- Immunocytochemical evidence that symbiotic algae secrete potential recognition signal molecules in hospite
- CRISPR-Cas defense system and potential prophages in cyanobacteria associated with the coral black band disease
- The ASLO Storytellers Series Connecting with Our Keiki (Hawaiian for "Children")
- A Shifting Tide: Recommendations for Incorporating Science Communication into Graduate Training
- Implication of the host TGFβ pathway in the onset of symbiosis between larvae of the coral Fungia scutaria and the dinoflagellate Symbiodinium sp. (clade C1f)
- Translating science into stories
- The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics
- Coral-associated viral communities show high levels of diversity and host auxiliary functions
- Diel cycling and long-term persistence of viruses in the ocean's euphotic zone
- Bioinformatic Teaching Resources – For Educators, by Educators – Using KBase, a Free, User-Friendly, Open Source Platform
- The National Microbiome Data Collaborative: enabling microbiome science
- ECOGEO Workshop: Binning Module - Anvi'o
- Local BLAST database
- Assembly Introduction
- Concatenated Tree Construction Demo: Identify Marker Genes
- Qiime Commands
- ECOGEO 'Omics Training: 3.1 Amplicon Analysis - Mothur
- ECOGEO 'Omics Training: 4.3 Binning Module - Anvi'o
- Teaching the art and science of getting research funding
- Quality Assessment: FastQC
- Functional Annotation & Beyond with Integrated Microbial Genomes (IMG)
- Mothur Amplicon Analysis
- Unix and Bioinformatics
- Unix and Bioinformatics
- ECOGEO 'Omics Training: 1.0 Unix and Bioinformatics
- ECOGEO 'Omics Training: 2.0 Quality Control
- ECOGEO 'Omics Training: 4.1 Assembly
- ECOGEO 'Omics Training: 4.2 Annotation
- ECOGEO 'Omics Training: 4.4 Phylogenetics
- ECOGEO 'Omics Training: 3.2 Amplicon Analysis - QIIME
- ECOGEO 'Omics Training: Introduction to Environmenal 'Omics using a Unix-based Virtual Machine
- Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data
- Planet Microbe: Toward the integration of oceanographic ‘omics, environmental and physiochemical data layers
- Marine Viruses
- Marine Symbioses: Metazoans and Microbes
- Reef invertebrate viromics: diversity, host specificity and functional capacity
- Novel T4 bacteriophages associated with black band disease in corals
- iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
- A Genomic Catalogue of Earth’s Microbiomes - Introductory KBase Narrative
- 2020 Multiscale Microbial Dynamics Modeling Course
- Introduction to Metadata and Ontologies: Everything You Always Wanted to Know About Metadata and Ontologies (But Were Afraid to Ask)
- A genomic catalog of Earth’s microbiomes
- Make the Most Out of Genome Announcements with KBase
- Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis
- Temporal and spatial infection dynamics indicate recognition events in the early hours of a dinoflagellate/coral symbiosis
- The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis
- Ocean Sciences Perspectives on Integrated, Coordinated, Open, Networked (ICON) Science
- Ten simple rules for getting and giving credit for data
- Metagenome-assembled genome extraction and analysis from microbiomes using KBase
- Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase
- The Importance of Sharing Data in Systems Biology