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Publications

  • Rapid recovery gene downregulation during excess-light stress and recovery in arabidopsis
  • RNA polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
  • Excess light priming in Arabidopsis thaliana genotypes with altered DNA methylomes
  • Science forum: A community-led initiative for training in reproducible research
  • The arabidopsis DNA methylome is stable under transgenerational drought stress
  • Autophagy mutants show delayed chloroplast development during de‐etiolation in carbon limiting conditions
  • Elucidating the role of SWEET13 in phloem loading of the C 4 grass Setaria viridis
  • Genetic suppression of plant development and chloroplast biogenesis via the Snowy Cotyledon 3 and Phytochrome B pathways
  • Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
  • CTAB genomic DNA extraction from Arabidopsis leaf material v2
  • APX2 induction via herbicide infiltration (DCMU, DBMIB, Methyl Viologen) v1
  • MethylC-seq using EZ DNA Methylation-Gold Bisulfite and Accel-NGS DNA Library Kits v1
  • Generating chemically competent (E. coli) cells
  • Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics
  • Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis
  • Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis
  • CTAB genomic DNA extraction from Arabidopsis leaf material
  • Growing Arabidopsis on nutrient-rich media
  • Harnessing genetic variation at regulatory regions to fine-tune traits for climate resilient crops
  • Dye-terminator DNA sequencing
  • Protoplast isolation and PEG-mediated transformation
  • Retrograde Control of Cytosolic Translation Targets Synthesis of Plastid Proteins and Nuclear Responses for High-Light Acclimation
  • Improving rigour and reproducibility at RSB
  • Supplemental Material for Eichten et al., 2020
  • Maintenance of pre-existing DNA methylation states through recurring excess-light stress
  • Extending the genotype in brachypodium by including DNA methylation reveals a joint contribution with genetics on adaptive traits
  • Insights into chloroplast biogenesis and development
  • Uncoupling high light responses from singlet oxygen retrograde signaling and spatial-temporal systemic acquired acclimation
  • A chloroplast retrograde signal, 3’phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination
  • RNA extractions from de-etiolated Arabidopsis seedlings using CTAB
  • In situ PCR using leaf epidermal peels
  • Dye-terminator DNA sequencing
  • Heterologous protein expression in E. coli
  • SYBR green one-step qRT-PCR for the detection of SARS-CoV-2 RNA in saliva
  • Dye-terminator DNA sequencing
  • Nickel-NTA Protein Purification
  • Denaturing PAGE for resolving RNA
  • Plant RNA extractions using TRI reagent
  • The covalent nucleotide modifications within plant mRNAs: What we know, how we find them, and what should be done in the future
  • The role of SWEET4 proteins in the post-phloem sugar transport pathway of Setaria viridis sink tissues
  • Elucidating the role of SWEET13 in phloem loading of the C4 grass Setaria viridis
  • Transcriptional acclimation to warming temperatures of the Australian alpine herb Wahlenbergia ceracea
  • Transcriptional acclimation to warming temperatures of the Australian alpine herbWahlenbergia ceracea
  • Modified protocol for genome-wide mapping of uncapped transcripts (GMUCT) in eukaryotes
  • Plant RNA purification using TRIzol (TRI reagent)

Diep Ganguly's public data