Diep Ganguly

Publications

• Rapid recovery gene downregulation during excess-light stress and recovery in arabidopsis
• RNA polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
• Excess light priming in Arabidopsis thaliana genotypes with altered DNA methylomes
• Science forum: A community-led initiative for training in reproducible research
• The arabidopsis DNA methylome is stable under transgenerational drought stress
• Autophagy mutants show delayed chloroplast development during de‐etiolation in carbon limiting conditions
• Elucidating the role of SWEET13 in phloem loading of the C 4 grass Setaria viridis
• Genetic suppression of plant development and chloroplast biogenesis via the Snowy Cotyledon 3 and Phytochrome B pathways
• Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
• Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics
• Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis
• Harnessing genetic variation at regulatory regions to fine-tune traits for climate resilient crops
• Retrograde Control of Cytosolic Translation Targets Synthesis of Plastid Proteins and Nuclear Responses for High-Light Acclimation
• Maintenance of pre-existing DNA methylation states through recurring excess-light stress
• Extending the genotype in brachypodium by including DNA methylation reveals a joint contribution with genetics on adaptive traits
• Insights into chloroplast biogenesis and development
• Uncoupling high light responses from singlet oxygen retrograde signaling and spatial-temporal systemic acquired acclimation
• A chloroplast retrograde signal, 3’phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination
• SYBR green one-step qRT-PCR for the detection of SARS-CoV-2 RNA in saliva
• The covalent nucleotide modifications within plant mRNAs: What we know, how we find them, and what should be done in the future
• The role of SWEET4 proteins in the post-phloem sugar transport pathway of Setaria viridis sink tissues
• Elucidating the role of SWEET13 in phloem loading of the C4 grass Setaria viridis
• mRNA ADENOSINE METHYLASE promotes drought tolerance through N6‐methyladenosine‐dependent and independent impacts on mRNA regulation in Arabidopsis
• Novel resources to investigate leaf plasmodesmata formation in C3 and C4 monocots
• Molecular signatures of heat tolerance and sensitivity in the alpine plant Wahlenbergia ceracea during moderate warming
• Molecular signatures of heat tolerance and sensitivity in the alpine plantWahlenbergia ceraceaduring moderate warming
• CTAB genomic DNA extraction from Arabidopsis leaf material v2
• Arabidopsis leaf protoplasting v1
• MethylC-seq using EZ DNA Methylation-Gold Bisulfite and Accel-NGS DNA Library Kits v1
• APX2 induction via herbicide infiltration (DCMU, DBMIB, Methyl Viologen) v1
• Generating chemically competent (E. coli) cells v2
• E. coli protein expression and purification v1
• Generating chemically competent (E. coli) cells v3
• Heterologous protein expression in E. coli v2
• In situ PCR using leafepidermal peels v1
• Heterologous protein expression in E. coli v3
• Heterologous protein expression in E. coli v4
• Heterologous protein expression in E. coli v5
• Nickel-NTA Protein Purification v1
• CTAB genomic DNA extraction from Arabidopsis leaf material v3
• Isolating enriched fractions of nuclear and cytoplasmic RNAs from Arabidopsis flowers v1
• Modified protocol for genome-wide mapping of uncapped transcripts (GMUCT) in eukaryotes v1
• Plant RNA purification using TRIzol (TRI reagent) v2