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Bastien Llamas

Publications

  • Additional evaluations show that specific BWA‐aln settings still outperform BWA‐mem for ancient DNA data alignment
  • Ancient DNA of northern China Hystricidae sub-fossils reveals the evolutionary history of old world porcupines in the Late Pleistocene
  • Using Ancient DNA Analysis and Radiocarbon Dating to Determine the Provenance of an Unusual Whaling Artifact
  • Equitable Expanded Carrier Screening Needs Indigenous Clinical and Population Genomic Data
  • The genetic origins and impacts of historical Papuan migrations into Wallacea
  • Human Genetic Research in Wallacea and Sahul: Recent Findings and Future Prospects
  • The immunogenetic impact of European colonization in the Americas
  • A 1000-year-old case of Klinefelter's syndrome diagnosed by integrating morphology, osteology, and genetics
  • Ethics of DNA research on human remains: five globally applicable guidelines
  • Ancient mitochondrial genomes from the Argentinian Pampas inform the early peopling of the Southern Cone of South America
  • Stochastic models support rapid peopling of Late Pleistocene Sahul
  • Ten millennia of hepatitis B virus evolution.
  • Runes from Lány (Czech Republic) - The oldest inscription among Slavs. A new standard for multidisciplinary analysis of runic bones
  • Systematic benchmark of ancient DNA read mapping
  • Genozip 14 - advances in compression of BAM and CRAM files
  • Genozip Dual-Coordinate VCF format enables efficient genomic analyses and alleviates liftover limitations
  • Binding affinities of 438 HLA proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest HLA peptide binders in populations worldwide
  • Ancient DNA from an extinct Mediterranean micromammal— Hypnomys morpheus (Rodentia: Gliridae)—Provides insight into the biogeographic history of insular dormice
  • Ancient DNA Reconstructs the Genetic Legacies of Precontact Puerto Rico Communities
  • A Paleogenomic Reconstruction of the Deep Population History of the Andes
  • More Arrows in the Ancient DNA Quiver: Use of Paleoepigenomes and Paleomicrobiomes to Investigate Animal Adaptation to Environment
  • Ancient DNA helps trace the peopling of the world
  • A strategy for building and using a human reference pangenome
  • Deep FASTQ and BAM co-compression in Genozip 15
  • Individuals with Inflammatory Bowel Disease Have an Altered Gut Microbiome Composition of Fungi and Protozoa
  • Mitogenomes Reveal Two Major Influxes of Papuan Ancestry across Wallacea Following the Last Glacial Maximum and Austronesian Contact
  • Sedimentary ancient DNA from caves: Challenges and opportunities
  • Allelic bias when performing in‐solution enrichment of ancient human DNA
  • Equity, diversity, and inclusion at the Global Alliance for Genomics and Health
  • Paleogenomic study of the Mexican past
  • genozip: a fast and efficient compression tool for VCF files
  • Ancient genomes reveal over two thousand years of dingo population structure
  • Exploring the Potential of Genome-Wide Hybridization Capture Enrichment for Forensic DNA Profiling of Degraded Bones
  • More than dirt
  • Ancient DNA Studies in Pre-Columbian Mesoamerica
  • A Multidisciplinary Review of the Inka Imperial Resettlement Policy and Implications for Future Investigations
  • Genozip: a universal extensible genomic data compressor
  • The landscape of genomic structural variation in Indigenous Australians
  • Shrouded in history: Unveiling the ways of life of an early Muslim population in Santarém, Portugal (8th– 10th century AD)
  • Benchmarking Imputed Low Coverage Genomes in a Human Population Genetics Context
  • Cases of trisomy 21 and trisomy 18 among historic and prehistoric individuals discovered from ancient DNA
  • Biological sex estimation using ancient DNA in Classic Maya contexts
  • Millennial processes of population decline, range contraction and near extinction of the European bison
  • Environmental conditions associated with initial northern expansion of anatomically modern humans
  • Ancient DNA and morphometrics reveal a new species of extinct insular shelduck from Rekohu Chatham Islands
  • A strategy for building and using a human reference pangenome
  • Widespread male sex bias in mammal fossil and museum collections
  • Spatiotemporal landscape genetics
  • Filtering out the noise Metagenomic classifiers optimise ancient DNA mapping
  • The genetic origins and impacts of historical Papuan migrations into Wallacea
  • Preliminary ancient DNA screening results from first to eighth century AD sites in Samtavro and Tchkantiskedi, Georgia
  • Progress and prospects in rat genetics: a community view
  • High-resolution analysis of cytosine methylation in ancient DNA
  • From the field to the laboratory
  • Population size history from short genomic scaffolds: how short is too short?
  • Data-sharing for indigenous peoples
  • Race in a genome: long read sequencing, ethnicity-specific reference genomes and the shifting horizon of race
  • El ADN antiguo y la historia del poblamiento temprano del oeste de Sudamérica: lo que hemos aprendido y hacia dónde vamos
  • Early cave art and ancient DNA record the origin of European bison
  • Molecular phylogeny, biogeography, and habitat preference evolution of Marsupials
  • Chromosome Y variants from different inbred mouse strains are linked to differences in the morphologic and molecular responses of cardiac cells to postpubertal testosterone
  • Ancient mitochondrial genomes clarify the evolutionary history of New Zealand's enigmatic acanthisittid wrens
  • Genetic studies of the peopling of the Americas
  • Ethnic and mouse strain differences in central corneal thickness and association with pigmentation phenotype
  • Parallel palaeogenomic transects reveal complex genetic history of early European farmers
  • A re-appraisal of the early Andean human remains from Lauricocha in Peru
  • Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
  • AmericaPlex26
  • Cardiac mass and cardiomyocyte size are governed by different genetic loci on either autosomes or chromosome Y in recombinant inbred mice
  • Differential gene expression profiling of orbital adipose tissue in thyroid orbitopathy
  • Iron Age and Anglo-Saxon genomes from East England reveal British migration history
  • Genome-wide patterns of selection in 230 ancient Eurasians
  • Experimental conditions improving in-solution target enrichment for ancient DNA
  • Megafaunal isotopes reveal role of increased moisture on rangeland during late Pleistocene extinctions
  • Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore
  • Ancient DNA Analysis Suggests Negligible Impact of the Wari Empire Expansion in Peru's Central Coast during the Middle Horizon
  • Mitochondrial genome sequencing in mesolithic North East Europe unearths a new sub-clade within the broadly distributed human haplogroup C1
  • The origin and phylogenetic relationships of the New Zealand ravens
  • Arrival routes of first Americans uncertain
  • A paleogenetic perspective on the early population history of the high altitude Andes
  • Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution
  • Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain
  • Climate change underlies global demographic, genetic, and cultural transitions in pre-Columbian southern Peru
  • Ancient mitochondrial genome reveals unsuspected taxonomic affinity of the extinct Chatham duck (Pachyanas chathamica) and resolves divergence times for New Zealand and sub-Antarctic brown teals
  • Human evolution
  • Molecular resolution to a morphological controversy
  • Did the historical range of the European bison (Bison bonasus L.) extend further south?—a new finding from the Yenikapı Metro and Marmaray excavation, Turkey
  • DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification
  • Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta
  • Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
  • Current evidence allows multiple models for the peopling of the Americas
  • Reconstructing the Deep Population History of Central and South America
  • Massive migration from the steppe was a source for Indo-European languages in Europe
  • Novel effects of chromosome Y on cardiac regulation, chromatin remodeling, and neonatal programming in male mice
  • Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia
  • Unraveling the phylogenetic relationships of the extinct bovid Myotragus balearicus Bate 1909 from the Balearic Islands
  • Low-cost cross-taxon enrichment of mitochondrial DNA using in-house synthesised RNA probes
  • Reply to Santiago-Rodriguez et al.
  • An extinct nestorid parrot (Aves, Psittaciformes, Nestoridae) from the Chatham Islands, New Zealand
  • Late Pleistocene Australian marsupial DNA clarifies the affinities of extinct megafaunal kangaroos and wallabies
  • Further dissection of a genomic locus associated with behavioral activity in the Wistar-Kyoto hyperactive rat, an animal model of hyperkinesis
  • Identification and validation of Loci and candidate genes linked to cardiac hypertrophy.
  • The Collaborative Cross, a community resource for the genetic analysis of complex traits
  • A genetic locus accentuates the effect of volume overload on adverse left ventricular remodeling in male and female rats
  • Distinct QTLs are linked to cardiac left ventricular mass in a sex-specific manner in a normotensive inbred rat intercross
  • Corticosteroid binding globulin
  • QTL mapping for traits associated with stress neuroendocrine reactivity in rats
  • Genetic determinants of systolic and pulse pressure in an intercross between normotensive inbred rats
  • Hypertensive cardiac remodeling in males and females

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