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bf_Avana19q2_ht29_a549_ovcar8.
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JUPYTER
cas12a-step01-screen_QC.
ipynb
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JUPYTER
cas12a-step02_polish_fc_matrix.
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JUPYTER
cas12a-step03_fc_position_effects.
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JUPYTER
cas12a-step04_calc_SMF.
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JUPYTER
cas12a-step05_compare-SMF-to-BF.
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JUPYTER
cas12a-step06_calc_dLFC.
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JUPYTER
cas12a-step07_robustZ_of_dLFC.
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TEXT
pan-species-control-essentials-50genes.
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pan-species-control-nonessentials-50genes.
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paralog-pairs-to-test.
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STable1_predicted_paralog_pairs.
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Supplementary_Table2.
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Supplementary_Table3.
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enCas12a screen analysis pipeline
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posted on 08.05.2020, 22:08
authored by
Traver Hart
Traver Hart
Jupyter notebooks (Python v3.8) pipeline for analysis of enCas12a dual-guide paralog knockout screens.
Funding
R35GM130119
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Categories
Genomics
Bioinformatics
Cancer
Cell Biology
Computational Biology
Genetics
Keywords
python
CRISPR
Cas12a
paralogs
cancer
functional genomics
jupyter
Licence
CC BY 4.0
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CC BY 4.0