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bf_Avana19q2_ht29_a549_ovcar8
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JUPYTER
cas12a-step01-screen_QC
.ipynb
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JUPYTER
cas12a-step02_polish_fc_matrix
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cas12a-step03_fc_position_effects
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JUPYTER
cas12a-step04_calc_SMF
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JUPYTER
cas12a-step05_compare-SMF-to-BF
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JUPYTER
cas12a-step06_calc_dLFC
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JUPYTER
cas12a-step07_robustZ_of_dLFC
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pan-species-control-essentials-50genes
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pan-species-control-nonessentials-50genes
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paralog-pairs-to-test
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STable1_predicted_paralog_pairs
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Supplementary_Table2
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Supplementary_Table3
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enCas12a screen analysis pipeline
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posted on 2020-05-08, 22:08
authored by
Traver Hart
Traver Hart
Jupyter notebooks (Python v3.8) pipeline for analysis of enCas12a dual-guide paralog knockout screens.
Funding
R35GM130119
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Categories
Genomics
Bioinformatics and computational biology not elsewhere classified
Oncology and carcinogenesis not elsewhere classified
Biochemistry and cell biology not elsewhere classified
Genetics not elsewhere classified
Keywords
python
CRISPR
Cas12a
paralogs
cancer
functional genomics
jupyter
Genomics
Bioinformatics
Cancer
Cell Biology
Computational Biology
Genetics
Licence
CC BY 4.0
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