rearrvisr_DLindtke.pdf (5.62 MB)
rearrvisr R package Doro Lindtke
rearrvisr: an R package to detect, classify, and visualize genome rearrangements
The package can be used to localize rearrangements (i.e., disturbances in marker order) along a focal genome relative to a compared genome, and classify them as inversions, interchromosomal or intrachromosomal translocations. The compared genome can be an ancestral genome reconstruction or an extant genome. Rearrangements, breakpoints, and synteny blocks are output in a tabular format and can be visualized by two graphical functions along the focal genome, or be utilized for further custom analyses.
