RNA-Seq isoform calls and differential expression .pptx (5.95 MB)
RNA-Seq isoform calls and differential expression - Kallisto and Sleuth. Allele-specific strategies in RNA-Seq analysis.
Version 2 2016-11-02, 06:09
Version 1 2016-11-02, 05:50
presentation
posted on 2016-11-02, 06:09 authored by Milos PjanicRNA-Seq isoform calls and differential expression (DE).
Explanation of the theory and examples of mapping-free tool Kalisto for RNA isoform calls and Sleuth, accompanying DE tool.
Allele-specific strategies in RNA-Seq analysis: AlleleSeq, skewed binomial distribution, ALEA, WASP and combined haplotype test. Phasing/Imputation.