JUC_2014_Boston_IMoutsatsos_V2.pptx (6.9 MB)
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Jenkins as a Scientific Data and Image Processing Platform

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posted on 02.06.2015, 20:59 authored by Ioannis MoutsatsosIoannis Moutsatsos

This presentation describes the use of Jenkins-CI, a popular open source, continuous integration server, as a platform for scientific data and image processing platform. Jenkins-CI includes several useful features that support process automation, scalability, data pipelining, collaboration, and reproducibile research. We demonstrate how we have used Jenkins-CI in combination with CellProfiler (an open source image analysis software) to efficiently process thousand of images from high content screening campaigns.