pcbi.1011107.s002.pdf (10.5 MB)
This file includes the plots of the exponential fits to contact formation probability curves for all native contacts of the entangled RD1 protein.
journal contribution
posted on 2023-11-13, 18:43 authored by Leonardo Salicari, Marco Baiesi, Enzo Orlandini, Antonio TrovatoOnly the 52 trajectories refolding at t = 0.9Tf through the fast channel are used to compute contact formation probabilities. All plots in this file are drawn as explained in the caption of Fig 7.
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rich refolding behaviorlike loop foldconfirming previous predictionsattracted increasing attentionyet entangled looplike entangled motifsknown experimental evidenceshaping folding kineticstwo small singlestate folding mechanismentangled sh3 domainnative entanglement propertiesfolding kineticsknown twonative statesmall sizedomain proteinsunfolded statenative intermediatenative contactsxlink ">unfolded configurationsterminal threadterminal residuessurprising abundancenovel indicatormodel recapitulateskinetic traphomeostasis networkfast pathwayeither backtrackingbased modelanalyze simulationsalready formed
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