pgen.1010657.s017.pdf (16.7 kB)
The lengths of introgressed haplotypes predicted by IntroUNET at increasing distances away from the adaptive introgression even on chr3R.
journal contribution
posted on 2024-02-20, 18:26 authored by Dylan D. Ray, Lex Flagel, Daniel R. SchriderIntrogressed haplotypes were defined as runs of consecutive SNPs classified as introgressed for a given individual. The sweep center was set to position 4624900, the center of the window with the lowest level of diversity in this region (data from [39]).
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world scenarios underscorestrained neural networkmuch higher frequenciesinsufficient — ideallydiv >< pdeep neural networkdeep learning approachesdeep learning algorithmsignificant fitness advantageclosely related speciesrecovering introgressed haplotypesimage classification problemharbor introgressed lociregion previously shownuse simulated datapopulation genetic alignmentidentifying introgressed allelesuse ="population alignmentone speciesfitness effectscorrectly identifyingintrogressed materialintrogressed allelesimage representationimage belongswidespread phenomenontypically neutraltypically confinedsometimes confersemantic segmentationreal datareadily extendedpurifying selectionpotential relevanceperforming comparablynumerous methodsidentify regionsidentify alleleshighly effectivehighly accurategrowing bodygene flowfull extentevidence suggestsdrosophila close relativechallenging realanalysis reveals>, showing
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