Ten example segmentations on simulations from our archaic introgression scenario: 5 from IntroUNET (left) and 5 from ArchIE (right).

Ray, Dylan D.; Flagel, Lex; Schrider, Daniel R.

doi:10.1371/journal.pgen.1010657.s013

pgen.1010657.s013.pdf (239.54 kB)

Ten example segmentations on simulations from our archaic introgression scenario: 5 from IntroUNET (left) and 5 from ArchIE (right).

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posted on 2024-02-20, 18:26 authored by Dylan D. Ray, Lex Flagel, Daniel R. Schrider

For each example we show the true and inferred introgressed alleles in the recipient population. For each method, both examples with and without introgression are shown.

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world scenarios underscores trained neural network much higher frequencies insufficient — ideally div >< p deep neural network deep learning approaches deep learning algorithm significant fitness advantage closely related species recovering introgressed haplotypes image classification problem harbor introgressed loci region previously shown use simulated data population genetic alignment identifying introgressed alleles use ="population alignment one species fitness effects correctly identifying introgressed material introgressed alleles image representation image belongs widespread phenomenon typically neutral typically confined sometimes confer semantic segmentation real data readily extended purifying selection potential relevance performing comparably numerous methods identify regions identify alleles highly effective highly accurate growing body gene flow full extent evidence suggests drosophila close relative challenging real analysis reveals >, showing

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Ten example segmentations on simulations from our archaic introgression scenario: 5 from IntroUNET (left) and 5 from ArchIE (right).

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