pcbi.1011303.s001.pdf (1.62 MB)
Supporting information for: Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0.
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posted on 2024-02-29, 18:54 authored by Bastiaan J. R. Cockx, Tim Foster, Robert J. Clegg, Kieran Alden, Sankalp Arya, Dov J. Stekel, Barth F. Smets, Jan-Ulrich KreftSupporting information for: Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0.
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undergone intensive testingsubstantially enhanced easescalability enabling simulationsgraphical user interface10 million agentsspherical agent morphologiessecond test casedifferent models withoutkey new featuresdiv >< pmi dyn c modular idynomics 2new idynomics 20 idynomics 2case studyagent propertiesbased modelsunit testsunit conversionsstronger competitionspecific advantagesshoving algorithmpositive feedbackparticularly suitedorthogonal modulesoften occurmorphology usingmodel specificationmix flexibilitymicrobial communitiesmathematical modelinglocal interactionsincreased performancehighly sensitivehabitable environmentsgrowth strategygrowing numbergiving usersenables researchersdata analysiscooperative individualscompetition outcomescombining experimentsarithmetic functionadding morphologyadaptive behavior0 joins
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