pntd.0011831.s001.docx (344.04 kB)
S1 Text -
journal contribution
posted on 2024-01-02, 19:13 authored by Monica Medappa, Petra Pospíšilová, Maria Paula M. Madruga, Lucy N. John, Camila G. Beiras, Linda Grillová, Jan Oppelt, Arka Banerjee, Marti Vall-Mayans, Oriol Mitjà, David ŠmajsTable A. Genome Sequences of TPE strains/isolates used for MLST target design. Table B. Genes/genomic regions excluded from the analyses (i.e., paralogous, and repetitive regions). Table C. Genes with the highest number of SNVs containing more than 8 SNVs per kbp among TPE strains/isolates. Table D. Characteristics of candidate genes considered for TPE typing. Table E. Primers used for the amplification of the first (outer primers) and the second step (inner primers) of nested PCR. Table F. Positively selected sites according to TPE Samoa D reference strain. Fig A. Phylogenetic tree based on sequences of the of typing loci including TP0488, TP0548, and TP0858.
(DOCX)
History
Usage metrics
Categories
Keywords
ulcer duration lessspecific serological testsprimarily affects childrenlocal human populationfirst ulcer episodesexpected exclusive reservoirdiv >< p23s rrna geneslow genetic diversitylocus sequence typingendemic disease causedthree distinct genotypespapua new guineayaws eradication campaign1081 samples collectedtpe isolates combiningthree tpe genotypestreponema pallidum two new allelespatients ’ ulcerspcr positivity comparedtpe pcrminor genotypespertenue low levelendemic characternew opportunitytpe dnathree jyounger patientsyaws infectionstyping schemeswab samplessix monthssingle ulcerssamples genotypedrural regionspreviously publishednamatanai districtjune 2018intragenomic recombinationhumans openedfully typedfrequently detecteddeletion eventsdecember 2019chromosomal locia2058g mutation4 %)11 isolates
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC