Reference isolates deposited in Leptospira PubMLST included in phylogenetic tree constructions.

Mendoza, Marjo V.; Rivera, Windell L.

doi:10.1371/journal.pone.0258891.s005

pone.0258891.s005.docx (17.69 kB)

Reference isolates deposited in Leptospira PubMLST included in phylogenetic tree constructions.

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posted on 2021-10-20, 17:32 authored by Marjo V. Mendoza, Windell L. Rivera

All information available on reference isolates in Leptospira PubMLST database are shown. STs are based on original MLST schemes. *Reference isolates with same STs associated with the isolates in the present study.

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targeting 23s rrna reduced scheme addressed phylogenetic analysis confirmed one sample cannot method often used loci genetic profile clinically diagnosed cases challenges often encountered allelic profiles identified 16s rrna (<disease epidemiology specifically multilocus sequence typing div >< p simplified mlst scheme human leptospirosis cases rapid direct typing philippines rapid typing direct typing disease surveillance molecular typing rrs2 mrea lipl41 lipl32 leptospira l interrogans adk two serovars tertiary hospital serovar manilae serological tests serogroup pyrogenes routinely done public health potential alternative positive samples pathogen transmission nine positives new st monitor occurrence mlst schemes major threat interpretable data host specificity hospital settings could lead clinical specimens clinical samples clearly differentiated blood samples also aid

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Reference isolates deposited in Leptospira PubMLST included in phylogenetic tree constructions.

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