Motif Analysis of Tup1 ChIP in Stationary Phase (3 day).

TP = The number of primary sequences matching the motif / the number of primary sequences (the percentage of primary sequences matching the motif) TP% = The percentage of primary sequences matching the motif with scores greater than or equal to the optimal match score threshold FP = The number of control sequences matching the motif / the number of primary sequences (the percentage of control sequences matching the motif) FP% = The percentage of control sequences matching the motif with scores greater than or equal to the optimal match score threshold ENR_RATIO = The relative enrichment ration of the motif in the primary vs. control sequences, defined as Ratio = ((TP+1)/(NPOS+1)) / ((FP+1)/(NNEG+1)), where NPOS is the number of primary sequences in the input, and NNEG is the number of control sequences in the input SCORE_THR = The match score threshold giving the optimal p-value. This is the score threshold used by SEA to determine the values of “TP” and “FP”

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