HLA allele-based analysis.

Patient Best Rank (PBR) scores were calculated for each of 193 different alleles that were called minimally once in the TCGA dataset. The within-patient logistic regression analysis was performed considering the mutation matrix used for the virtual patient main analysis. Plot shows odds ratios (OR) with 95% confidence intervals for each allele with HLA-A, HLA-B and HLA-C indicated by colors and alleles with highest/lowest OR labelled. Alleles with OR above/below 1 (determined at 5% FDR) with corresponding frequencies are indicated below the plot.

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