Enrichment of ATACseq peaks in differentially expressed genes.

Jefferys, Stuart R.; Burgos, Samuel D.; Peterson, Jackson J.; Selitsky, Sara R.; Turner, Anne-Marie W.; James, Lindsey I.; Tsai, Yi-Hsuan; Coffey, Alisha R.; Margolis, David M.; Parker, Joel; Browne, Edward P.

doi:10.1371/journal.ppat.1009346.s007

ppat.1009346.s007.doc (14.45 kB)

Enrichment of ATACseq peaks in differentially expressed genes.

journal contribution

posted on 2021-02-26, 18:42 authored by Stuart R. Jefferys, Samuel D. Burgos, Jackson J. Peterson, Sara R. Selitsky, Anne-Marie W. Turner, Lindsey I. James, Yi-Hsuan Tsai, Alisha R. Coffey, David M. Margolis, Joel Parker, Edward P. Browne

For each experimental comparison, the number of cellular genes associated with a significant change for its RNA transcript and/or an ATACseq peak (fold change>1.5, P_adj<0.1), were calculated. Statistical enrichment of ATACseq peak changes in genes with changing transcript levels was calculated using Fisher’s exact test (lower right panel).

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