pcbi.1011586.s004.docx (35.61 kB)
Domains of Life recorded in ECOD 2016(v45) and 2022(v285).
journal contribution
posted on 2024-02-28, 18:35 authored by R. Dustin Schaeffer, Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. GrishinDomains of life determined by PDB metadata associated with NCBI Taxonomy Ids. Archaea (A), Eukarya (E), Bacteria (B), and Virus (V) along with Other (O) or Unknown (U) NCBI taxonomy categories. PDB metadata associated with obsolete PDB or NCBI taxonomy ids resolve to (Unk).
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whole proteome setscale domain annotationprotein target selection808 proteins comprisedprovide positive classificationfuture classification strategiesstable ecod referencehighly populated domains48 whole proteomesecod domain classificationdomain regionsrepeated proteinsprotein domainsevolutionary classificationvarying populationsunassigned domainstim barrelssmall repeatsrossmann domainsloop domainsidentifiable nonhomologous groupshigher proportionhigher fractionexperimental structuresdisordered regionsclassified 746biological insightsalphafold database349 domains
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